Chanodichthys erythropterus (predatory carp): 137031812
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Entry
137031812 CDS
T10334
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cery Chanodichthys erythropterus (predatory carp)
Pathway
cery03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137031812 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cery03019
]
137031812 (patl1)
Messenger RNA biogenesis [BR:
cery03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
137031812 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
137031812 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
137031812
NCBI-ProteinID:
XP_067259188
LinkDB
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Position
12
Genome browser
AA seq
783 aa
AA seq
DB search
MFRFQSFDDDCTLEEEEGLVEEEDEIDQFNDDTFGAGAIDDDWQEEHARLAELDELVRDG
PPGAADASSGDLPPAGSNANPSALPPPSSSSRLYPDIDERAGGDLAESLTRLILGSDPAI
AGVGTASSDRSHFPPKLSSQAPHPSALSGQSLMRSYQHHQHLLHRGPAPLSQINSHSIWE
NSMGFGPVNAGLVNQKEDKTLMSIIKEVGLPNRPPTLSREEGRDLSERVPPPRSSSPVIG
SPPVRAVPIGTPPKQPMSQVLNQQNNHPSAVHVRASVPLRYPPPFPERLSPNNLLSIANS
PLSHPPFPAGVGPVLSQIQRAQLLNSQVGQFQRGPAPPLLQGGVGGFRPFFGQSGPRMGP
HGPPLGHAPIRHNTTHLHPQHRRMLNQRMQNRGSGDHVGGRGVGDRKNRDPYSNLMTQRE
KEWVARIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERDRDNRKEHTTKLITPQVAKLEHT
YRPVQFAGSLGKLTVSSVNNPRKMIDAVVTTRSDDEEKREKQVWNKRRQILYTVEKMYSL
LLEVQDFEKKFLQTPEHQRDALLEQHKTHTLQLYNSLREKEWDDRVSDEQCLMIMSVRKG
KRLISRLLPFLPQPQAAAVVMGIARNLPALAKKDKQDQVLCWLVEPVTSVIQSMSSTSLT
DLLQELQGREGQLPLVLQNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRWTELVFSVTR
ELLKVPSSALSSPLFTPPNLVSLFSRYVDRQRLELLQEKLQRKLQEPFLPIPGGNVHNSA
ICS
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgttccgttttcagtcttttgacgatgactgcaccctggaggaggaggaagggttggta
gaggaagaagatgaaattgaccagttcaatgatgacactttcggagcaggggcaatcgat
gatgattggcaggaggagcacgcccgcctggcagagcttgacgagctcgttcgagatggg
ccgccgggagcggccgatgcctcctccggtgacctccctcctgctggcagcaatgccaac
ccttcggctctcccgccaccttcctcttcctcccggctttaccctgacatagatgagcgg
gctggcggtgacctggcggagtcattgactcgtctcatcttgggctcggatcctgctatt
gctggagtgggcactgccagctcggacagatctcactttcctccgaagctgtccagtcag
gctcctcatccctcggcattatctggacagtctctgatgaggagctaccaacatcaccag
catctcctgcacagagggccggctcctctttcacagataaactctcacagtatttgggag
aacagtatgggcttcggtcctgttaacgctggactagtcaatcaaaaagaggacaaaaca
cttatgtccattatcaaagaggtcgggcttccaaatcggcctcccacactcagcagagaa
gaagggcgagatttgtccgaaagggttccgccccctcgctcctcctcacctgtgattggt
agtccacctgtacgagctgtacctattggaacgcctccgaaacagcccatgagtcaagtc
ctcaaccagcagaataatcacccttcagccgttcacgtgagagcctccgtgccactgcgc
taccctcctcccttccctgagcgtctgtcccccaacaacctgctcagcatcgctaactcg
ccgttgtctcatcctccattccctgctggtgttggtcctgttttgtctcagatacagaga
gcccaactgctcaactctcaggttggtcagttccagcgtggtccagctcctccattatta
caggggggtgttgggggtttcaggccattctttgggcagtctggtcctagaatgggtccc
catgggcctcctctcggccacgcacccatccgacacaacaccacccacctgcacccacag
caccgcaggatgctcaaccagaggatgcagaacagaggctcaggtgatcacgttggcggg
agaggtgttggagacaggaaaaacagagatccttacagcaatctaatgactcaaagagag
aaggaatgggtagcaagaatccaaatgatgcagcttcaaagcaccgatccgtatttggat
gactactattaccagaattattatgagaaaatggagaagcgccaggagcgggacagagac
aacaggaaggaacacaccaccaaactcatcactcctcaggtggccaaactggagcacacc
tatcgtccagtgcagtttgccggctcattaggaaaactcactgtctccagtgtcaacaat
ccaaggaaaatgattgatgccgtggtaaccacccgcagtgatgatgaggaaaaaagagag
aagcaagtgtggaataaaagacgacaaatcctttacactgtggagaagatgtacagtcta
ctgctagaagtgcaagactttgagaagaagttcttgcaaacccccgagcaccaaagagat
gccctgctagaacagcataaaacccacacgctgcagctctacaactccctccgagaaaaa
gagtgggacgaccgagtgagcgatgagcagtgcttgatgatcatgtctgtgcgtaagggg
aaacgcctcatctccagactcctccccttcctgccacagccacaggcggctgctgttgtc
atgggaatagccaggaaccttccagccctggccaagaaagacaaacaagaccaggttctg
tgttggttggtggagccagtcacatcagtaatccagtccatgtcgagtacctccctcacc
gatctccttcaggagctacagggcagggaaggacagcttcccctcgtgctgcaaaacaag
tttggcgtgacgctgctgtatctgattctgagtgaaggagagaggatgcagagctcggat
cccaactgtcagctcatggatgacaaccgctggactgagttggtgttctctgtgacccgg
gagcttttgaaggtcccgtcctctgcgctctcgtcaccgctgttcactcctccaaatcta
gtgtcgctgttctctcgatacgtggaccggcagagacttgagctcttgcaggagaagcta
cagagaaagcttcaagagcctttcttaccaattccgggtgggaatgtccacaattcagca
atttgttcctga
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