Chanodichthys erythropterus (predatory carp): 137031837
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Entry
137031837 CDS
T10334
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
cery Chanodichthys erythropterus (predatory carp)
Pathway
cery03030
DNA replication
cery03410
Base excision repair
cery03420
Nucleotide excision repair
cery03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
137031837 (rfc1)
03410 Base excision repair
137031837 (rfc1)
03420 Nucleotide excision repair
137031837 (rfc1)
03430 Mismatch repair
137031837 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cery03032
]
137031837 (rfc1)
03400 DNA repair and recombination proteins [BR:
cery03400
]
137031837 (rfc1)
DNA replication proteins [BR:
cery03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
137031837 (rfc1)
DNA repair and recombination proteins [BR:
cery03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
137031837 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_7
AAA_5
AAA_30
AAA_33
Rad17
RuvB_N
AAA_16
AAA_14
BRCT_2
AAA_17
nSTAND3
RNA_helicase
NTPase_1
AAA_18
AAA_19
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
137031837
NCBI-ProteinID:
XP_067259244
LinkDB
All DBs
Position
12:complement(19612565..19631411)
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AA seq
1137 aa
AA seq
DB search
MDIRRFFASTKPAAPKPSNGSTSTDEEQKKKQKSKTKVKSPTSDEKPTGKRKKRIIIDSD
SEEEKKEKKTKKSTKETAAPTVKKHPVTYVSDSDSDDTFMKKPKPKENGMAKGKKESDSG
KAKQAKVSPSKSPIKSPNTISKGGVKSSQPTVSKKVAPTPPKQTPTSVMAFFGSSSVQRS
EKKMVASISTKRKAPTQETDESLSDEAIAKELQMDEDMELEKQIHDDEEFAKTLAMLDEA
PLPKKARVDSVSPSKSSSQAVASDTKPKKDPSPKTSPVKASSKLAQMKRRQDEEHEQRKK
DRDEKKIKISPKKEPISPASSEQAATPKTGSVPTGMTKSRSISTPKSEPSKTSPTKPENT
SPEDLEKKRANSSAYRNFLNREGPRALGSKEIPQGAENCLEGCVFVLTGVLESMERDDAK
SLIERYGGKVTGNVSRKTTYLVLGRDSGASKTEKAESFGTKIINEDELLDLIRTKPGKKS
KYEIAAEAENKSSKTRTPDSRGKPSPPAKKATPQGPSPNKRSPSEGKSKPGSASKSRTLG
ASRSEVKKSLSYDQTKTASPVSHTTPENDGSSLLWVDKYRPRNLKNLIGQQGDQSCANKL
LRWLQNWHKHHSGSTKAPSKFGKFGSKDDGSGFKAALLSGPPGVGKTTTAALVCEELGYS
YVEMNASCTRSKNSLKEVIAESLNNTSIKNFYTGASQTVSSKHVLIMDEVDGMAGNEDRG
GIQEMIGLIKQSKIPIICMCNDRNHQKIRSLANYCYDLRFQRPRVEQIKGAMMSIAFKEG
LKIPPPALNEVILASNQDIRQILHNLSMWSAKDKVMTYDQAKADANNAKKDMKLGPFDVC
RKVFSSGEETAHMSLIDKSDLFFHDYSLAPLFVQENYLHVRPAAAGGSLKNHLVLLSKTA
DSICDGDLVDKQIRSRQTWSLLPTQAIYASVLPGELMRGYMSQFPTFPSWLGKFSSAGKH
SRILQELASHMSLKTLSSKEAINLDYLPYLHSAILEPLQSQGSEGANQSVKLIDAYDIIK
EDVDNMMEISTWGGQPDPYSKLDSKVKAAFTRAYNKESHLMPYSLQVVKKSRKGAIDPEL
VGEIDNESQVQEEEEDDGLTGDAMIKQKKAKPAKDIKQEKPGASGKGKGRGKGKAKN
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atggacatccgaaggttttttgcgtccaccaaacctgcggcgcccaaaccttcaaatgga
agcaccagcactgatgaagaacagaagaagaaacagaaatcaaaaactaaggtcaaaagt
cccacatctgatgagaaacccactggaaaacgaaagaaacgaatcatcattgattcagac
tctgaggaagaaaagaaggagaagaagaccaaaaagagcactaaagagactgctgccccc
acagtgaagaaacacccagtaacttacgtgtctgattctgattcggatgatacatttatg
aaaaagcccaaacccaaagaaaatggaatggcaaaaggcaagaaggagtcagattcagga
aaagcaaaacaagcaaaagtctcccccagtaaatctccaatcaaatccccaaacacgatc
tcaaagggaggcgtgaagagttctcagcccaccgtctcgaaaaaggtcgcaccaacccca
ccaaaacagacgcccacctcagtaatggccttctttgggagctcaagtgttcagaggtcg
gagaagaaaatggtggccagtatcagcaccaaaaggaaggcacccacacaggaaactgat
gagtcactcagtgatgaagccattgcaaaagaacttcagatggatgaagacatggagttg
gagaagcagattcatgatgatgaggaatttgcaaaaacattagccatgctggatgaagct
cccttacccaaaaaggctcgggtggactctgtctccccttccaagagcagctctcaggca
gttgcatcggacaccaaacccaaaaaggacccatcccctaaaacaagtcctgtgaaggcc
agctccaaactggctcagatgaaaagacgacaggatgaagaacatgagcaaagaaaaaaa
gacagggatgaaaagaaaattaagatctctcctaagaaagagcccatttcaccagctagc
tcggagcaggcagctacacccaaaacaggaagtgttcccacaggaatgacaaaatcaagg
agtatttccactcctaaaagtgaacccagtaaaacctcaccaacaaaaccagagaatacg
agtcctgaggacctagagaaaaaacgggcaaattcgtcagcctaccgaaactttctgaac
agagaaggaccacgagcactggggtctaaagagattccacagggagcagagaactgtctg
gagggttgtgtgtttgtgttgactggtgtgttagagtctatggagagggatgacgctaaa
tcactgatagagcgatatggtgggaaagtcacaggaaatgtcagccgtaaaaccacttac
cttgttctgggacgagacagtggagcctcaaagactgagaaggcggagagttttggcact
aagatcattaatgaagatgagttgttggacctcataagaaccaaaccaggcaagaagtct
aaatatgagattgcggcagaggcagagaataaatcctctaaaacaaggactccagactct
agaggcaagcccagtcctccagccaagaaggccacaccgcaagggcccagccccaacaag
agaagcccatcagaggggaagtctaagcctggctctgcctctaaatctagaacacttggg
gcctctcgttcagaggtcaaaaagagtttgagctatgatcaaaccaagacagcatcccct
gtatcccacactaccccagagaatgatgggagcagcctgttgtgggtggataagtaccgc
ccccgcaatctgaagaacctgattggacagcagggggatcagagttgtgctaacaagctt
ctgcgttggttacagaattggcataaacatcacagcggcagtacaaaagcaccatccaaa
tttggtaaatttgggagtaaagatgatggttctggatttaaggctgcattgttatctggg
cctcctggtgttgggaagaccactactgctgctctcgtctgtgaggagttgggttacagc
tacgtggagatgaatgcgagctgcacccgcagtaagaacagcttaaaggaagtgatcgca
gaatcactcaacaacaccagcattaagaacttctatacaggtgcatctcagacagtgagc
agtaaacatgtcctcataatggatgaggtggacgggatggcaggaaatgaagacagagga
ggaatacaggaaatgattggtctgataaaacagtcaaagattcccatcatctgcatgtgt
aatgaccgcaatcatcaaaagatccgctcgctggccaactactgctatgacctgcggttt
cagagaccccgtgttgagcagatcaagggggctatgatgtctatagctttcaaagaaggt
ctgaaaatcccacccccagcacttaatgaagtcatcctggcatccaatcaggatattcgg
cagatcctgcataatctgagcatgtggtcggctaaagacaaggtcatgacctatgaccag
gccaaagcggatgctaacaatgctaagaaagacatgaaactgggtccatttgatgtgtgc
cggaaggtgttttcttcaggagaggaaactgcccacatgtcattaattgacaaatcagac
cttttctttcatgattactctttagccccactatttgtccaagaaaattacctacatgtc
cgaccagctgctgcagggggaagtctgaagaatcatttggtgttgttgagtaaaacagcg
gacagcatttgcgatggagatttagtagacaaacagatccgctccagacagacctggtct
ctgcttcctacacaggcaatttatgcaagcgtgttgccaggggaactgatgcgcggctat
atgagtcagtttccaacctttcccagctggttgggcaagttttcatcagctggcaaacac
agccgcatcttacaggagctggcttcacacatgagcttaaagacgttaagtagtaaggaa
gcaataaatctggattacctgccgtatttgcactccgcaatactagagcctcttcagtcc
caaggttcagaaggagccaatcagagtgtgaagctcatagatgcttatgacatcattaaa
gaggatgttgataacatgatggagatcagcacatggggtggacagccggatccttactct
aaactagactccaaggtgaaagctgcatttacaagagcctacaataaggaatcccatctt
atgccgtactccttacaagtggttaagaaaagccgtaaaggtgctattgaccctgagctt
gtaggagagattgacaatgaatctcaggtccaggaagaggaagaagacgatgggcttact
ggagatgcgatgatcaagcaaaagaaagccaaaccagcaaaagatatcaagcaagagaaa
ccaggggcttctgggaaggggaaaggcaggggtaaaggaaaggccaaaaactga
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integrated database retrieval system
