Chanodichthys erythropterus (predatory carp): 137033762
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Entry
137033762 CDS
T10334
Symbol
ythdc2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
cery Chanodichthys erythropterus (predatory carp)
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cery03041
]
137033762 (ythdc2)
Enzymes [BR:
cery01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137033762 (ythdc2)
Spliceosome [BR:
cery03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
137033762 (ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
Helicase_C
OB_NTP_bind
HA2_C
R3H
DEAD
Ank_2
HA2_N
Ank
AAA_19
ATPase
nSTAND3
PhoH
AAA_22
Ank_4
AAA_16
ABC_tran
AAA_7
AAA_30
Motif
Other DBs
NCBI-GeneID:
137033762
NCBI-ProteinID:
XP_067262133
LinkDB
All DBs
Position
13:complement(53572478..53597239)
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AA seq
1376 aa
AA seq
DB search
MSRKSSMNASKQTTSLKAKGLKDIRIDEEVKIAVNIALERFQYSDDKELDFPSSLTNSER
AFVHRLAQSLGYISKSRGKGSSRYLTVRKKDGTETARSVMTCNLTHNSKHMVQNLLQRFP
ITSKERSELQPRTERVVVTSPDASDSKSRTSGRLSHGIPQVPQKRGPSELDCFRRALPVY
ERQEELVQTIRENQVVLVLGETGSGKTTQIPQFLLDDCSRNGIPCRIFCTQPRRLATIAV
AERVASERGEKIGQTIGYQIRLESRVSPRTLLTFCTSGVLLRTLMAGDEALSTVTHVIVD
EVHERDGLTDFLLTKMKDMLQKMPSLKLILSSATLDVNLFIRYFGACPVIHIKGCPYDVK
QLFLEDILRTTGYTNKDMVKYKKEAQKEERQQTSLTEWCDARQDVLQPEPAREKTPTCVL
QENDLLDDGGDSVFSQMSEKDVATLEPWLLREMDACISNIFLHQDSDAFIQLFNLILNEN
ISVDYGHSETSATPLMAAAGRGFISQMEQLLSMGANVNIKASNGWTALDWAKHFSQPEAV
DLLESHIWCVESGQLDESSLVQKATSELSSEDQELLKAYHHSFDDEKVDLDLILHLLFNI
CQSSDEGAVLIFLPGYDEIVSLRDRIVFDDERFSDHQQRFQVFILHSSMQTSDQKKVLKN
TPKGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKAYDALNNVTMLKMVWISKASALQR
KGRAGRCRPGICFHLFSRLRFNNMLEHQIPQLLRMPLQELCLHTKLLAPITCPIAEFLSK
APEPPHLHTIKHAVQMLKTIDAMDPWENLTELGYHLADLPVEPHLGKMVLCAVVLKCLDP
ILTIACTLAHRDPFVLPAQAAQKRVAMLCRKRFTANTFSDHMALLRAFQAWQKARSDGWE
RAFCEKNFLSQATMEIIVGMRTQLLGQLRATGFVRARGGGDIRDVNQNSENWAVVKAALV
AGMYPNLIHVERDSLTLMGSKEKKVRLHPTSVLSQPPYKKIPPANGQTAAVESLPTDWLI
YDEMTRAHRIASIRCCSAVTPLTVAIFGGCAKLPSSALQEHRAAADGANESSDSEMEDRS
SARLAQISIDEWLNFRLDREMAELVFGLRQRWQSLFLRRIRSPSKACSQLDEATIRTLVS
VLSAEEQVTGLQQPTGIGQRPRPMNSDEALQTASCKSAGRRDPEEPPSPDRPRLASQMKN
HRALHSKQLGDELVPFKSADGPSSPSSGKSCTSPSPRPLRSCVRYFIMKSSNVRNIELSQ
QRGIWSTTPNNEHKLTRAFHESSAVFLIFSVQGSGHFQGYARMTSAISGERCLDWGSVGL
GGVFGVEWVRKENLPFQLTQQLLNPWNDNKRVQISRDGQELEPQAGSQLLQLWERI
NT seq
4131 nt
NT seq
+upstream
nt +downstream
nt
atgtcacggaaatcgagcatgaacgcgtcgaaacagacgacctctctgaaagcgaaaggg
ctcaaagacatcaggattgatgaagaggtcaaaatcgctgtgaatatcgctctggagagg
ttccagtacagcgacgacaaagagctggatttcccttcttcattgacaaattctgagaga
gcgttcgtacatcggcttgctcaatcgctgggctacatctcgaaaagcagagggaaaggc
tccagtcgatatcttactgtgaggaagaaggacgggacagagacggcacggtccgtcatg
acctgtaacctcactcacaactccaaacacatggtgcaaaaccttctgcagaggttcccc
atcaccagcaaagagcgcagtgagctccagccgcgcacagagagagtcgtcgtcacttct
ccagacgccagcgacagcaaaagcaggaccagcggccgtctgagtcacggtattcctcag
gttcctcagaaacgaggcccgtctgaactggattgctttcggagagcgctgcccgtgtat
gaacgtcaggaggagctcgtccaaaccatcagggagaaccaggtggtgctggttttgggt
gagaccgggtcaggcaaaaccacacagatcccccagttcctcctggacgactgcagtcga
aacgggattccttgccggatcttttgcactcagcccaggaggttggctaccatcgctgtg
gcggagcgtgtggcgtctgagcgtggcgagaagatcggacagaccatcggctatcagatc
cgcctggagagcagagtttctccccgaaccttactgacgttctgcacgagtggagtcctg
ctgaggacgctgatggccggagatgaggctctgtccacggtcactcatgtcattgtggac
gaggtgcacgagcgagacggactgacggacttcttactcactaagatgaaggacatgctt
cagaagatgccgtcgctaaagctcatcctgtccagcgccaccctggacgtcaatctgttc
atcagatactttggagcgtgtcctgttattcacatcaaaggatgtccttatgacgtcaag
cagctctttctggaggacatcctgcggaccaccggctacactaacaaagacatggttaaa
tacaagaaggaggcgcagaaagaggagcggcagcagacgtccctgacagagtggtgtgac
gcccgtcaggacgtcctgcagcctgaacctgcgagggaaaagacgcccacttgtgtcctg
caggagaatgacctcctggatgacggcggagacagcgtcttcagccagatgagcgagaag
gacgtggccacgttagagccctggctgctcagggaaatggacgcctgcatctcaaacatt
ttcctgcaccaagactctgacgccttcatacaactcttcaatctgatcctgaatgagaac
attagtgtggattacggacacagtgagacgagcgccacgcctctgatggcggccgcaggt
cgagggttcatcagccagatggagcagctcctgagcatgggcgcaaacgtcaacatcaaa
gcctccaacggctggacggctcttgactgggccaaacacttcagtcagcccgaggctgta
gatctgctggagtctcacatatggtgtgttgaatcgggtcagctggacgagtcatctctg
gtccagaaggccacatctgaactgagctctgaggaccaggagctgctcaaggcgtatcat
cacagcttcgacgacgagaaggtcgacctcgacctcatcctgcatctgctcttcaacatc
tgtcagagctctgacgagggcgcggtgttgatattcctgcccggctacgatgagatagtc
tctctgagagatcgcatcgtctttgatgatgaaaggttttcagaccaccagcaaaggttt
caggtcttcatacttcactccagtatgcagacgtcagaccagaagaaggttttgaagaac
actcctaaaggtgttcgcaagatcatcctctccaccaacatcgcagagaccagcatcacg
gtcaacgatgttgtgttcgtcatcgactccggcaaagttaaagagaaagcgtacgacgct
ctgaataacgtgacgatgctgaagatggtgtggatatcgaaggccagcgctctgcagagg
aagggcagagcgggccgctgcagacctgggatctgtttccatctcttcagccgtctgagg
ttcaacaacatgctggaacatcagattccacagctgctgcgcatgcctctacaggagctg
tgtctgcacactaaacttctggcacccatcacctgcccgatcgctgagttcctgtctaaa
gcacccgagccgccacacctgcacaccattaaacacgctgtacagatgctgaagaccatc
gacgccatggacccctgggagaacctgacggagctgggctatcacctggccgacctgccc
gtggagccgcatttagggaagatggttctgtgtgcggtggtgctgaagtgtttggacccc
atcctcaccatcgcctgcacgctggcccacagagacccgttcgtgctgcccgctcaggcc
gctcagaagcgcgtggccatgctgtgccggaaacgcttcacggccaacaccttcagcgat
cacatggctttgctccgggcctttcaggcgtggcagaaagctcgcagtgacggctgggaa
agagctttctgcgagaagaacttcctctctcaggccaccatggagatcatcgtggggatg
cggacgcagcttttgggacagcttcgagcgacaggtttcgtgcgagcgaggggcggcggc
gacatccgggatgtcaatcagaactcggagaactgggccgtggtcaaggctgcgctggtc
gccggcatgtatcccaacctgatccatgtggagcgggacagcctgaccctcatgggctcc
aaagagaagaaggttcggctccacccgacgtccgtcctgagccagccaccgtacaagaag
atccctccagccaatggtcagacagcagcagtggagtccctgcccaccgattggctgatt
tacgatgagatgacgcgcgctcacaggatcgccagcatcagatgctgctctgcggtcacg
cccctgaccgtggccatattcggaggatgtgctaaactcccgagctccgccctgcaggaa
cacagagcagccgctgacggagcgaacgagagcagtgacagcgagatggaggatcgctcc
agcgctcgtctggctcagatcagcatcgacgagtggctcaacttcagactggaccgagag
atggcggagctggtgttcggcctcaggcagcgctggcagagcttgttcctgcggcggatt
cgctctccgtctaaagcctgctctcagctggacgaggccaccatccgtacgctggtgtcg
gtgctgtcggccgaggagcaggtcacaggcctccagcagcccaccggcatcggccagaga
cctcgacccatgaactctgacgaagccctgcagacggcctcctgcaagagcgccggccgc
agggacccggaggagccgcccagcccggacagacctcggctggcgtctcaaatgaagaat
cacagagcgcttcactcaaagcagctgggagacgagctcgtccccttcaagagcgctgac
ggcccctcgtccccctcctctggaaaaagctgcacgtctccgtccccgcggccgctgcgc
tcctgtgtgcgatacttcatcatgaagagcagcaacgtgaggaacatcgagctgtctcag
cagaggggaatctggtccacgacgcccaacaacgagcacaaactcacccgagcttttcac
gagagcagcgccgtcttcctcatcttctccgttcagggatccggacacttccagggttac
gcacgcatgacgtcagcgatcagcggcgagaggtgtctggactggggttcggtcggtctg
ggcggtgtgttcggtgtcgaatgggtccgtaaagagaatctgcccttccagctcacgcag
cagctgctgaacccctggaacgacaacaagagagtccagatcagccgagacggacaggag
ttggagcctcaggcaggaagtcagttgctgcagctctgggagcgaatctga
DBGET
integrated database retrieval system
