Chanodichthys erythropterus (predatory carp): 137035734
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Entry
137035734 CDS
T10334
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
KO
K06823
collagen type XVIII alpha
Organism
cery Chanodichthys erythropterus (predatory carp)
Brite
Exosome [BR:
cery04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
137035734 (col18a1a)
Proteoglycans [BR:
cery00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
137035734 (col18a1a)
Glycosaminoglycan binding proteins [BR:
cery00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137035734 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
137035734
NCBI-ProteinID:
XP_067265425
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All DBs
Position
14:complement(21206084..21298515)
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AA seq
1774 aa
AA seq
DB search
MSELRFWLCLFIVVCLRICHTHGWFWYDDSNAKGTQTPAYLSTLRPTSPPRTEPPRTAGT
SASVTVVEKEVSYNGGHFEGESEFISRSGLGVESESVNGSEFASGSGSGSSQFERQDAYV
TSTNVSGIAGENASLHVGNLKLETKVDQMDGLQSGSDPAYSQFNESINVKNVSIYNNNNN
TEHDEYDNTTLYSSEYSVSDNLLTIESEYFVARMPVVESSRCLPVDPDLPFCTRTRVDSF
MVPNFLNQSSVEEVQVVLTQWAWLLRSNCHHSLEWFFCLLLTPRCGPPGLLPPLPCRSFC
EVLRDSCWTLLDEGRLPVECHSLPEEKHDGYRCLSVSNQKEESGVSLLQLIGDPPPDGVT
KTFEHDNSPSYMFGPNANVGQSAAAHLPSPFYRDFSLIFNIKLMSAKPGVIFSITDPTQN
IMYVGVKLSAVKNGKQNIIFYYTEPDSQSSYEAARFTVPSMSMTWTRFSISVLNEQVSLY
FNCDSDPQVLNFERSPDDMELDAGAGVFVGHASGADPDKFVGVIGDLRVVGDPGAAERHC
EEEEDDFDANLQGSGDFGASGDGDRPPSVQPTPPSSRPIQQPPVTSRTLVEKQQTGSVDS
SRQTGSYGGSRKTSSSYGDPRKTSVSYGDSRQTSGSYGDSEQTSGSYGDSQQTSGSYSGS
RQSSGTYGGSRQTLDSVAVSKQTSGSYDDSRQASNSLRTSGSADDGIRYSVESRLGSAGP
TGSIGARGEKGDRGEKGVKGDRGLTGPKGDSGSGSVSGGAVKGEKGDTGEKGIKGSSGFG
YPGSKGDRGPAGPPGPPGPPGPSAEVEVRGDGSVLQKVAGPRGPPGPPGPPGVDGEPGDP
GEDGKAGQVGPPGFPGTPGSKGEKGDRGESQPGPRGPPGPPGPPGPPSRSDRPTFVDMEG
SGFDMDSVRAMPGLPGPPGPPGPPGPPGLASSGSGGFGPPGPPGQNGAPGQPGLPGPPGA
DGKPGSPGPRGEKGDAGELGLPGPVGEKGATGSPGSPGLNGQGGLAGLPGPMGPVGPPGP
PGPPGPSFAGFDDMEGSGIHFSSVPGIRGPVGIQGPPGIPGPQGKPGFPGFPGEKGSEGP
QGQDGRPGLDGFPGPQGPKGDRGDRGERGEPGRDGTSVPGPPGPPGPPGQIIYRYSETDD
EIGVAGPQGGPGRPGQAGFPGPMGPKGDRGEPGSPGYAIKGDKGEPGLILGPDGNPLYLG
GLVGQKGERGIPGPVGPPGPVGPPGLKGEFGMPGRPGRPGVNGYKGEKGDPGSGTGYGYP
GPPGPPGPPGPPGPAVPLDRFGRYEDYSRQYTATKGEKGDQGAPGIPGSPGLSSNFDIYA
LKNEMKGERGESGLKGEKGEPGGGFYDPRFGAVQGPPGNPGLPGPKGDSIRGPPGPQGPP
GPPGVGYDGRPGNPGPPGPPGPPGSPSLPGAYRPSLSIPGPPGPPGPPGIPGTGSGQVTV
LRSYDIMIATARRQTEGVLIYVLDRNDLYLRVRDGVRQVMLGDYKPFYGDLDNEVAAVQP
PPVVHYSQDHTANNGAEQISPPDQPIEFPRSEPENRNPNPPDSRYPDPRYPPYTDSRYNP
VQPEIRYPVQPERNPITPARRPSPPVNQPEGHSHTSGPGLHLIALNSPQVGNMRGIRGAD
FLCFQQARAVGMKGTFRAFLSSKLQDLYSIVRKSDRETLPIVNIKDQVLFRSWESLFSDS
ESRMKDNAPIYSFDGRDVLRDSAWPEKMIWHGSSGRGHRQTDNYCETWRAGDRAVTGLAS
SLQAGQLLQQTSSSCSSSYIVLCIENSYMAQSKK
NT seq
5325 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagctaaggttttggctgtgcctctttattgtggtgtgcttgaggatttgccac
acacatggctggttctggtacgatgattcaaatgcaaagggcacccagacaccggcctac
ctgtctaccctaaggcccacatcaccaccgaggacagagccgcccagaacagcaggtaca
agtgcttctgtaactgtggtggaaaaagaggtcagttacaatggaggtcattttgagggg
gaatcagagttcatatccaggtctgggttgggggttgaatctgaatctgtaaatgggtct
gaatttgcttctggatccggatctggatcttctcaatttgaaagacaggatgcctatgtt
acatcaaccaatgtttctggtattgctggtgaaaatgctagtttgcatgtgggaaacctc
aaactggagaccaaagtggaccagatggatggacttcagagcggcagtgacccagcatac
agtcaatttaatgaaagcattaatgttaaaaatgttagcatttataataataataataat
actgagcatgatgagtatgataacacgacgttgtattcctctgaatactctgtctccgat
aatctactaaccattgaaagtgagtattttgtagctcgcatgccggtcgtcgaatcctca
cgctgcttgccagtcgatcctgatttgccattttgcaccagaacgagagtggacagtttc
atggtgcctaattttctaaatcaaagcagcgtggaggaagttcaggttgttttaacccaa
tgggcatggcttttgcggtcaaactgccatcatagtttggaatggtttttctgcctgctg
ttgacaccgcggtgtggcccacctggactgctgcccccgctgccctgtcgcagtttctgc
gaagtcctgcgtgacagttgctggacactcctggatgagggccgcctccccgtggagtgt
cactctctgcctgaagaaaagcatgatgggtatcggtgcttgtcagttagtaaccagaaa
gaagaaagtggagtgtcactgttacagttaattggcgatcctccacctgatggcgtcacc
aaaacctttgaacatgataacagccccagctatatgtttggcccaaatgccaatgtggga
cagtcagctgcggcccacctgcccagccctttctaccgtgatttctccctcatcttcaac
ataaaactcatgtctgccaagcctggcgtcatattctccatcactgacccaacccagaac
atcatgtatgttggtgtgaagctgtcggcagtgaaaaacggcaagcagaatattatcttc
tactacactgagcctgactcgcagagttcatatgaggcggccagattcaccgtgccctca
atgtctatgacctggacccggttttccataagtgttttgaatgagcaggtttccctctac
ttcaactgtgactcagatcctcaggtcctcaattttgagcggtccccagatgatatggag
ctggatgccggggctggagtatttgttggccatgctagtggagcagatccagataagttt
gtgggtgttatcggtgatctgagggtggttggagaccctggggcggctgaacggcactgt
gaagaagaagaggatgactttgatgcgaatctgcagggatcgggtgattttggagcgagt
ggagatggcgaccgaccaccatcagtccagccgacacctccctcctctcggccgatccag
cagccgccggtgaccagcagaacacttgttgagaagcagcagacaggatcagtcgattcc
tctcggcaaactggctcctacggtggttctcgaaaaacatctagctcatatggggatccc
cgaaaaacgtctgtctcctacggtgattctcgacaaacatctggatcatatggtgattct
gaacaaacttctggttcatatggtgattcccaacaaacctctggctcatatagtggttct
cgacaatcatcgggcacgtatggtggttctcgacaaactcttgactcagtcgctgttagc
aagcaaacttcggggtcgtatgatgattctagacaagcttcaaactctctaagaacgtcg
ggctcagctgatgatggaatacggtattctgtggagtccagactgggttctgcaggtcca
acaggttctattggtgcaagaggagagaaaggagacagaggagagaagggtgtcaaaggt
gacaggggccttacagggccaaagggcgattccggatctggatctgtgtctggtggcgct
gtaaaaggagagaagggtgacacaggagagaaaggaataaagggcagttctggttttggt
tatcctggatcaaagggtgatcgtggtcccgctgggcctccagggcctcccggtcccccc
gggcccagtgcagaggtagaggtgagaggagatgggtcagttcttcaaaaggtggcagga
ccaagaggaccaccaggaccccctggccctcctggagttgatggggagccgggtgaccct
ggtgaagatggaaaagctggccaagttggacctcccggttttcctgggacccctggatcc
aaaggagagaaaggagaccgaggtgaaagtcagccaggaccccgtgggcctccagggcct
cctggcccaccaggacccccctctcgctctgacaggcctacatttgtggacatggagggc
tctgggtttgatatggacagtgtgcgggcaatgcccggtctacccggcccacctggtcct
cctggtccccccggtccccctggccttgcgtcttcaggctctggtggttttgggcctcct
ggtcctcctgggcaaaatggagctccaggtcaacctggccttccaggtccaccaggtgct
gatggaaagccagggtcacctggcccaagaggagagaagggcgatgccggtgagctgggc
ctacctggacctgtgggagagaagggtgccacaggttctcctggttctcctggcctcaat
ggacaaggtggacttgctggtcttccaggaccaatgggacccgtcggaccaccagggcca
cctggtcctcctggcccgagctttgctggttttgatgatatggagggttctggtattcac
ttcagttcagtccctggaataagaggaccagtaggaatccagggacctcccggtattcca
ggaccacaaggtaagcctggtttcccaggatttcctggtgagaaaggcagtgaaggacct
cagggacaagatggccgccctggtttggatggcttccctggaccacagggaccaaagggt
gacagaggagaccgaggcgagaggggtgaacctggacgagatggaactagtgttccaggt
ccacctggcccccctggaccacctggacaaattatttatcgttattctgaaactgatgat
gaaattggagtagcagggcctcagggtgggcctggtcgtcctggtcaagcgggattccct
gggccaatgggaccaaagggtgacagaggagaacctggttcaccaggctatgccattaag
ggagataaaggagaacctggacttattcttggacctgatggaaacccactttaccttggt
ggattggtaggccaaaagggtgagagagggattcctggaccagttggacctcctggtcca
gttggacctcccggtttgaaaggtgaatttggaatgccaggcagacctggccgcccaggt
gtaaacggatacaaaggagagaagggagacccagggtcaggcactggatatggttaccca
ggtccccccggtcccccaggaccccctggtccccccggacctgctgtgcccttggacaga
tttggaagatacgaagattattcaaggcaatatacagcaacgaaaggagagaaaggagac
cagggagctcctggcattcccggatcgccaggtttatcctcaaactttgatatctatgcc
ctcaagaatgagatgaagggggagcgtggtgagtccggtcttaaaggagagaaaggagag
ccaggaggtggattttatgaccctcgttttggagcggtacagggaccaccaggaaaccca
ggacttcctggacctaaaggagactcaatcagaggtccccctggaccgcagggcccacca
ggaccacccggggttggttatgatggccgtccaggaaacccaggacctcctggaccccct
ggccctccagggtcaccatcattgccaggagcctacagaccatcactcagtattcctgga
cctccaggtccccctggcccacctggaattcccggcactggatctgggcaggtgactgtc
ctgaggtcttatgacatcatgattgctacggcacgcagacagacagaaggagttctgatt
tatgttctggacagaaacgatctctacctcagagttcgggatggtgtcagacaagtgatg
cttggagattataaacccttctatggagacctggacaatgaggtggcagcggtccagccg
ccccctgttgttcactattcccaggaccacacagctaacaatggagcagagcagatttct
ccaccggaccagccgattgagtttccaaggagcgagccagagaatagaaaccccaatccg
cctgactcccgttacccagatccacgatacccaccctacactgatagcaggtacaatcct
gtacaaccagaaatcagataccctgttcaacctgagaggaaccctatcactccagcccgc
cgtcccagcccccctgtcaatcaaccagaaggccacagccacacttccggaccagggttg
catcttattgccctgaattctccacaagtggggaacatgagaggcattcgtggggcagac
ttcctgtgcttccagcaggctcgggccgtggggatgaagggaacattcagagccttcctg
tcttccaaacttcaggatctctacagtatcgtccgcaaatccgacagagagacattaccg
attgttaacatcaaggatcaagtccttttcagaagctgggagtctctcttcagtgactca
gagagcaggatgaaggacaatgctcctatctactcctttgatggcagagatgtcctgagg
gacagtgcctggccagagaagatgatctggcacgggtccagtggcaggggtcacaggcag
acggataactactgtgagacatggagagccggagaccgcgcagtgacaggcttagcctca
tctctgcaggctggccagctcctccagcagacctccagcagctgctccagttcctacatc
gtgctgtgcatcgagaacagctacatggcacaatccaagaaataa
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integrated database retrieval system
