Chanodichthys erythropterus (predatory carp): 137037305
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Entry
137037305 CDS
T10334
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cery Chanodichthys erythropterus (predatory carp)
Pathway
cery03013
Nucleocytoplasmic transport
cery03015
mRNA surveillance pathway
cery03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137037305 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
137037305 (ddx39b)
03015 mRNA surveillance pathway
137037305 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cery03019
]
137037305 (ddx39b)
03041 Spliceosome [BR:
cery03041
]
137037305 (ddx39b)
Enzymes [BR:
cery01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
137037305 (ddx39b)
Messenger RNA biogenesis [BR:
cery03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
137037305 (ddx39b)
Spliceosome [BR:
cery03041
]
Complex C
Other components
EJC/TREX
137037305 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
137037305 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
137037305
NCBI-ProteinID:
XP_067267295
LinkDB
All DBs
Position
15:complement(29566865..29577906)
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AA seq
474 aa
AA seq
DB search
MQFHMLGPSSKHSIRRMLMTSQTYRAGVVKSNGFIQHFEMTENDVENELLDYEEDEVDGG
VAGDTGLGHNDGVISIRKEGVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHE
CIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYE
RFSKYMPSVKVAVFFGGLSIKKDEEVLKRESPHVVVGTPGRILALSRNKSLNLRHIKHFI
LDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDE
TKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPA
IAIHRAMPQDERLARYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHR
VARAGRFGTKGLAITFVSDETDARTLNDVQDRFEVNISELPEEIDISSYIEQTR
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgcagttccacatgttgggtccttcatcaaaacattcaattcgtcgcatgttgatgacg
tcgcaaacatatcgagcaggtgtagtgaaatccaacggcttcatacagcatttcgagatg
acagagaacgacgttgagaatgagctgttagactatgaggaggatgaggttgatggaggt
gttgctggagatacagggcttggacacaatgatggtgtcatatccatcagaaaagaaggg
gtcaaagggtcatatgtgtccatccactcctctggattcagggatttccttctcaaacca
gaactcctgagagctatagtggactgtggctttgagcatccatctgaggttcagcatgaa
tgcattcctcaggcgatcttggggatggatgtattatgtcaggccaagtctggaatgggg
aagacggctgtctttgtgttggccacgcttcagcagctggagccagtgaccggtcaggta
tcggtgttggtgatgtgtcatacccgagagctggcgttccagatcagcaaagagtatgag
cgcttctccaaatacatgcctagtgtcaaggtggcggtgttctttggggggttatctata
aagaaggatgaggaggtgctgaagagagagagccctcatgtggtggtgggaactcctgga
cgtattctagctctgtctcgcaacaagagtctcaacctgcgacacatcaaacacttcatc
ctggatgaatgcgacaagatgctggagcaacttgacatgcggcgtgatgtccaggaaatc
tttcgaatgacccctcacgagaagcaggtcatgatgttcagtgcgaccctgagcaaagag
atccgtccagtctgcagaaagttcatgcaagatccgatggaaatttttgtggacgatgag
accaagctgacgcttcatggcctccagcagtactacgtcaaactgaaggacaacgagaag
aacaggaagctctttgacctattggatgtgttggagttcaaccaggtggtgatcttcgtt
aagtcggtgcagcgttgcatcgctcttgctcagttgctggtggagcaaaatttccctgcc
attgccattcacagagcaatgcctcaagatgaaagactagctcgatatcagcaatttaag
gatttccagagacggatcctggtagccacgaacctgtttggccgaggaatggacatcgaa
agagtcaacattgccttcaactacgacatgcctgaagattcagacacatacctgcacagg
gttgcaagggccggcaggtttggaacgaaaggtctggccatcacctttgtgtcagatgag
actgacgcccgcactttgaatgatgttcaggacaggtttgaggtgaacatcagtgaactt
ccagaggagattgacatctcgtcgtacattgaacaaacacgataa
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