Chanodichthys erythropterus (predatory carp): 137037368
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Entry
137037368 CDS
T10334
Symbol
skic2
Name
(RefSeq) helicase SKI2W isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
cery Chanodichthys erythropterus (predatory carp)
Pathway
cery03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cery00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137037368 (skic2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cery03019
]
137037368 (skic2)
Enzymes [BR:
cery01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137037368 (skic2)
Messenger RNA biogenesis [BR:
cery03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
137037368 (skic2)
mRNA degradation factors
3'-5' decay
Ski complex
137037368 (skic2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
DUF3516
HTH_23
Motif
Other DBs
NCBI-GeneID:
137037368
NCBI-ProteinID:
XP_067267410
LinkDB
All DBs
Position
15:29807611..29831013
Genome browser
AA seq
1251 aa
AA seq
DB search
MDKIDLPPVGPDDLPLSLLEMGCSGRFELITHPLPKNKPLPPHSTLPHGLPPTCLDLKTE
VEKRFLRDPAWLPVHDVDDAFHKFLKISKRQKEVDSLLRCSLSPLHSGLSVVRDPTTGML
LDFTEVLLEDTALSAKNSLSLQRQPGPPSESLRGSNTNYPFLPGGMEELTLEQIKKKSEL
EEDIDFEKDLLTVPPGLKAGMDFSDKEARTMKSEVNLLSLLSTFDDVLDALPEEKEGVSH
KEETVKLPRTNSLEDLGIKDSGNSPSQPPANTVSLTEQKKKPQEEDKGDNKKWAIPVDIT
SPCEDFYKRIPDPAFKYPFELDVFQKQAILRLEAHDSVFVAAHTSAGKTVVAEYAIALSQ
KHMTRTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLNPEASCLIMTTEILRSMLYNG
SEVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNAVEFSEWIGRI
KKRHIYVISTVKRPVPLEHHLYTGNSTKTQKELFLLLDSIGNFLTKGYYAAVEAKKERTS
KHAQSFGAKNVSQHNTTASQDRSVWQTLLNYLSQRQQTPVVAFTFSRTRCDENARSLTSL
DLTSSIEKSEIHSFLQKSLTRLRGADRQLPQILLMRDLLKRGIGVHHSGILPILKEVIEM
LFSKGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGL
DATGTVIILCKAGVHDMGDLHAMMLGKPTVLQSQFRLTYTMILNLLRVEALRVTDMMRRS
FSENHRDTQTHEKRITELRNMLSSLPPLDTEGQLSDLLSYYHTITELRITTETLQRAVLE
SVNGLKALSVGRVVIVNNSQHHNALGVILQVSNDAVNRTFTALIICEKGNEEAAGDNQSN
KVSLHIYNTALFIPEGPCSHTVQKLKLQDISALTTKTLKVIPERIIDNYNKRQQPRFRLD
PPGQAISTATQELLRLAEANPRGITTLDPVNDLHLKGVDVVEGVMRQRVLQDCLKDFHCI
HSPTFTEQFARVQERMSVQEELDKLLFLVSDQSLTLLPEYHQRIKVLEALQYVDSTGAVQ
LKGRVACQISSHELLLTELLFENTLSPLAPEESAALLSCLVFTQNTQIDPHITNTLQEGI
NQVLCVAQRIGELQRDCGIAQTAEDFVAQFKFGLTEVVYCWARGMPFAEIAQLTDVQEGT
IVRCIQRLDEVLKEVRQAARIVGDSVLGSKMERASLAIRRDIVFTASLYTH
NT seq
3756 nt
NT seq
+upstream
nt +downstream
nt
atggacaaaatagatttgcccccagttggtcctgatgatttgcccctgtctctgctggag
atgggctgctctgggagatttgagctcatcacacacccactgccaaaaaacaaacccctg
ccaccgcacagcacactccctcacgggcttcctcctacatgtctggacttaaaaacagag
gtagaaaagcgctttctgcgagatcctgcttggctccccgtacatgatgtagatgatgcc
ttccacaagttccttaagataagtaagaggcaaaaagaggtggactctctcctgcgctgc
tccctttctccactgcactctggtctgtctgtggtcagagatcccaccactggcatgctg
ctggatttcactgaggtgttattagaggacacagcattgtctgcaaaaaattccctttca
ttacaaagacagcctggacctccgtcagagagtctgagagggagtaacacaaactatcct
tttctgccaggtggaatggaagaactgacattagagcagattaagaaaaagtcagagctg
gaagaagacattgactttgagaaagatttgttgacggttcctccagggctgaaggctggt
atggacttcagtgacaaagaagccagaaccatgaagagtgaggtgaacctactgtcactc
ctgtcaacttttgatgatgtccttgacgctttgccagaggagaaagagggagtgtcacac
aaagaggagactgttaaacttcccagaactaacagcttagaggacctcggaattaaagat
tcgggcaactctccttctcagcctccagcgaacacagtaagtctgactgaacaaaagaag
aaaccacaggaagaagacaagggagacaataagaagtgggccattcctgtggacatcacc
tcaccctgtgaggacttctacaaacgtatccctgatcctgccttcaagtatccctttgag
ctggacgtgtttcagaagcaggctattctccgacttgaagctcatgactctgtctttgtt
gcggcccacacctcagcaggcaagaccgtggtggctgaatacgcaattgcactttcccag
aaacacatgacaaggaccatttacacatcccccattaaggccttgtccaatcagaagttc
cgggacttcaagaacacgtttggtgacgtgggactcttgactggagatgtccagctgaat
cctgaagcctcttgtcttattatgaccactgagattttgagatctatgctttataacggg
tccgaggtcattcgagatttggaatgggtcatttttgatgaggttcactatatcaatgat
gcagagaggggagtggtgtgggaggaagtgctcatcatgttgccagagcatgttagcatc
atcctgctgagtgccacggtgcctaacgcagtggagttcagtgaatggattgggcgtatc
aagaagcggcacatctatgttatcagcacagttaagaggcctgttcctctagagcaccat
ctttacaccggcaacagcaccaagactcagaaggagctattcctgttgctggactccatt
ggaaacttcctcactaaaggctactatgccgcggtggaagccaagaaggaacgcacaagt
aaacatgcacaatcttttggcgcaaaaaatgtatcacagcacaacacaacagccagtcag
gatcgatcagtgtggcagacgctgctgaactatctgtctcagaggcagcagactccagtg
gtggcgttcacgttctctcggacacgctgtgatgaaaacgcccgctctttgacctctctg
gacctcaccagctctatagaaaagagcgagatacactcgttcctccagaagagcctgacc
aggctgagaggagccgatcgacagttaccgcagatcctgttgatgcgtgatttgctgaag
agagggattggtgttcaccacagcggcatcctgccaatcctgaaggaggttattgagatg
ctattttccaaaggtttagtaaaggtgctgtttgctacagagacgtttgcaatgggtgtg
aacatgccagccagaactgttgtgttcgacagcatccgcaaacatgacggcacaggtttc
agaaacctgctgccaggtgagtacattcagatggcaggccgtgctggcagaagaggtttg
gatgctacggggactgttatcattctctgtaaggctggagttcatgatatgggagacctc
catgccatgatgctggggaaaccaacagtgctgcagtctcagttcagactgacctacaca
atgatcctaaatctgctccgtgtggaggcccttagggttaccgacatgatgaggaggagc
ttttctgagaaccacagggatacgcagactcatgagaagagaataactgagctgagaaac
atgctctcctctctccctccgctggacacagaggggcagttatctgatttactgtcatat
taccacaccatcacagagctgcgcatcaccacagagaccctgcagcgagctgtgctggag
tcagtaaatggactcaaagctctgtctgtggggagggtggtgatagtgaacaacagccag
caccacaacgccctgggagtcattctacaggtgtccaacgatgcagtaaatcgtacattc
accgctctcattatctgtgagaagggtaatgaggaggcggcgggcgataatcagtctaat
aaagtctcacttcacatctacaacactgcgctgtttattccagagggaccctgcagtcac
acagtgcagaaactgaagttgcaggacatctctgccctcacaaccaaaaccctcaaggtc
attccagagagaatcatcgacaactacaataaaagacagcagccacgcttcagacttgat
ccaccaggtcaggctatttctacagcaactcaggagctcttgcgattggctgaggccaat
ccgaggggcattacgacccttgaccctgtgaatgacctgcacctgaagggtgtggatgtg
gtggagggagtgatgaggcaacgagtgttacaggactgtctaaaagacttccactgtatc
cactcgcccaccttcactgaacagtttgcacgtgtacaggagaggatgagtgttcaggaa
gagcttgataagcttctgttcctggtgtctgatcagtcactgaccctgctgcctgagtac
catcagagaatcaaggtgttggaagctctgcagtatgtggacagcactggggcggttcag
ctgaagggacgtgtggcgtgtcagatcagcagtcatgagctgttactgactgaactcctg
tttgagaacactctgagtcctctcgcccctgaggagagcgccgccctgctgtcctgcctc
gtcttcacacaaaacacccagatagacccgcacatcaccaacacactacaggagggcatc
aatcaagtactctgtgtagcacagcgtattggtgagctgcagagggattgtgggatagct
caaactgctgaagactttgtggcccagttcaagtttggcctgactgaggttgtgtattgc
tgggcaagaggcatgccgtttgctgagattgcacagctgacagatgtgcaggaagggaca
atcgtgcgctgtatccagagactggacgaggtcctgaaggaagtgagacaggctgctcgc
attgtaggcgactccgtcctgggcagcaagatggaaagagcctccctagccatacgcaga
gacattgtgttcaccgcctcgctctacacacactga
DBGET
integrated database retrieval system
