Cellulosimicrobium sp. TH-20: B8281_04820
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Entry
B8281_04820 CDS
T04804
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cet
Cellulosimicrobium sp. TH-20
Brite
KEGG Orthology (KO) [BR:
cet00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cet03019
]
B8281_04820
Enzymes [BR:
cet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
B8281_04820
Messenger RNA biogenesis [BR:
cet03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
B8281_04820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
NACHT
T2SSE
nSTAND3
SRP54
Zeta_toxin
SLFN-g3_helicase
PhoH
ResIII
ABC_tran
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ARK04162
UniProt:
A0A1W6DMH9
LinkDB
All DBs
Position
complement(1057668..1062530)
Genome browser
AA seq
1620 aa
AA seq
DB search
MSTEPAANQPDARPPQRDGAAEGTPREGRRRRGNRRGRGRGERTASGTSTTTEPTRRGRG
ERTTSGPRQVSRAQLDRAAQARANVTVPPITYPEQLPVSARRADIAAAIRDHQVVIVAGE
TGSGKTTQLPKIALELGRGRSGQVGHTQPRRIAARTVAERIAEELGTELGGVVGYQVRFT
DTSSEDTLVKVMTDGILLAQIQRDPELLAYDTIIVDEAHERSLNIDFLLGYLARLLPRRP
DLKLIITSATIDSERFAQHFSPAHLAQLGGAPEYVVDALPDAAPVVEVSGRTYPVEIRYR
PLSPDVDPGSGTKAKGRAGAEEKDLVTGIVDACDELMREGPGDILVFLSGEREIHDAADA
LTGHLKDRITDPKHPQRVEILPLYARLSSAEQHRVFQAHSSRRIVLATNVAETSLTVPGI
HYVVDPGTARISRYSKATKVQRLPIEPVSQASANQRSGRSGRVADGIAVRLYSEDDFLAR
PEFTEPEILRTSLASVLLQMISVGVVETPDEVARFPFVEPPDTRAVRDGVQLLTELGALA
TSDGVTRLTEVGRVLAQLPMDPRLARMIWEGSRLGVAREVAIIAAVMSIQDPRERPAEVR
AQADQAHARFTDPHSDFLTYLNVWEYVREQQHELSSSAFRRLCKAEYLNFLRIREWQDVV
AQLREMSKPLGIDMSYKPRARGAAGDDGRRGPGRAAAAPEDAKGVAGLAGATRGTSGADG
SPSTSGAAAADPTTAPDATPDTQAYKRAWDGDTIHKALLSGLLSQIGMQDTGEVKASSVA
HLKGEARAKALRRAQKQARNEYTGARGARFAIFPGSPLSKKPPAWIMAGELVETSRLWAR
DVARIQPEWAEDLAGDLARRTYSEPHWSTKRGAAIATEKVLLYGVPIVADRKVLYAKVDP
EAAREMFVRHALVQGEWTTHHRFFHDNRKLLAEAEELEARSRQRGLVVDDDVLFDFYDER
VPDDVVSAAHFDRWWKTAQRRDPDLLTFTLEQLVPDAEQVDTSQFPETWPQGELTLPLTY
QFQPGTEADGVTVHVPISVLNRVVPDGFDWMVPGLLDELATATIRSLPKPVRVQLVPAPD
VARDVVAWLREHTPAWEDMARAGDMAEPFHVAFTRAVRALRDVVIPDDAWGPEQEARLPA
HLRMTFRVEDTRGRGGSVVLDESKDLLALQRRLAAQNQAAVRAAVKGAVGAALREAASGS
VPGSGASVSGSGASVPGSGPAAEGASVLGLPSAPLVPHGAPARPATPFASDAPSPASASG
SPGRGAGRAGGASSGATGVEAARGHGRPTAPSHGAAGPSIDGTPPAGSTTSLVSERTDLT
TWPDDLTDGRLPATVSTDLGGGVVVRGYPAVVEEQDAKGKPVVALRVLADATAQAREHAR
GVRRLLLTETALQTGRITSRWNGTQSLTLAASPYRNTDALVADLQLAAVIALTSGGSGQP
DAATIRDAEAYAAARTFVRAHLEEHVHQVVGHVVAALTASRNLDAEIRASNSLALLNTLT
DLRDQAAGLIHDGFVSQTPPRRLPHLTRYLRAASYRLEKAQSNPNRDAELAWRVHDVEDA
YQRARAAYAQGPADPVRAADLAEVRWLIEELRVSLFAQQLGTDGPVSEKRIRKLLTPDGW
NT seq
4863 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaccgagcccgcagcgaaccaacctgacgcgcgccctccccagcgggacggcgcc
gccgagggcaccccgcgcgagggtcgccgacgccgcgggaaccgccgcgggcgcgggcga
ggcgagcggacggcgtcgggcacctcgacgaccacggagccgacgcgtcgcgggcggggc
gagcggacgacgtcgggcccgcggcaggtgagccgcgcgcagctcgaccgggccgcgcag
gcgcgcgctaacgtgacggtcccgcccatcacgtaccccgagcagcttccggtcagcgcc
cgacgcgcggacatcgccgccgcgatccgcgaccaccaggtcgtcatcgtggcgggcgag
acgggctccgggaagacgacgcagctccccaagatcgcgctcgagctcggccgaggccgc
tcgggtcaggtcgggcacacgcagccccgccgcatcgccgcgcgcacggtcgccgagcgc
atcgcggaggagctcggcacggagctgggcggcgtcgtcgggtaccaggtgcggttcacc
gacacgtccagcgaggacacgctcgtcaaggtcatgacggacggcatcctgctcgcgcag
atccagcgcgacccggagctcctcgcgtacgacacgatcatcgtcgacgaggcgcacgag
cggtccctcaacatcgacttcctgctcggctacctcgcgcggctcctgccgcgccgcccc
gacctcaagctgatcatcacgtcggcgacgatcgactccgagcgcttcgcgcagcacttc
tcccccgcgcacctcgcccagctcggcggcgcgccggagtacgtggtcgacgcgctgccc
gacgccgcgcccgtcgtcgaggtgtccggccgcacctacccggtcgagatccggtaccgg
ccgctgtccccggacgtcgaccccggcagcggcacgaaggcgaagggccgcgcgggcgcc
gaggagaaggacctcgtgaccggcatcgtcgacgcgtgcgacgagctcatgcgcgaggga
ccgggcgacatcctcgtgttcctctccggcgagcgcgagatccacgacgccgccgacgcg
ctcaccggccacctcaaggaccgcatcaccgacccgaagcacccgcagcgcgtcgagatc
ctgccgctgtacgcgcggctgtcgtcggccgagcagcaccgcgtgttccaggcgcactcc
tcgcggcgcatcgtgctcgcgacgaacgtcgccgagacgtcgctcaccgtgcccgggatc
cactacgtcgtcgaccctggcacggcccgcatctcgcgctactccaaggcgacgaaggtc
cagcgcctgcccatcgagcccgtctcgcaggcgagcgcgaaccagcgctccggccgctcc
ggccgcgtcgccgacggcatcgcggtgcgcctctactccgaggacgacttcctcgcccgg
cccgagttcaccgagccggagatcctgcgcacctccctcgcgtccgtgttgctccagatg
atctccgtcggcgtcgtcgagacccccgacgaggtcgcgcgcttcccgttcgtcgagccc
ccggacacgcgcgccgtgcgcgacggcgtgcagctcctcaccgagctcggcgccctcgcc
acgtccgacggcgtcacgcgcctcaccgaggtcgggcgcgtcctcgcgcagctccccatg
gacccgcgcctcgcccgcatgatctgggagggctcgaggctcggcgtcgcgcgcgaggtc
gcgatcatcgccgccgtcatgtcgatccaggacccgcgcgagcgccccgccgaggtccgt
gcccaagccgaccaggcgcacgcgcgcttcaccgacccgcactccgacttcctcacctac
ctcaacgtctgggagtacgtccgcgagcagcagcacgagctctcgtcgtcggccttccgc
cgcctgtgcaaggccgagtacctcaacttcctgcgcatccgcgagtggcaggacgtcgtc
gcccagctccgcgagatgtccaagcccctcggcatcgacatgtcgtacaagccgcgcgca
cgcggcgcggccggtgacgacgggcggcgaggtccagggcgagcggcggctgcgcccgag
gatgcgaagggcgtggcgggcctggcgggagcgacgcgaggaacgagcggcgcggatggt
agcccgagcacctcgggggcagccgccgcggacccgaccaccgcccccgacgcaaccccc
gacacccaggcctacaagcgcgcctgggacggggacacgatccacaaggcgctcctgtcc
ggcctgctgtcgcagatcgggatgcaggacacgggcgaggtgaaggcgtcgtcggtcgcg
cacctcaagggcgaggcccgcgccaaggcgctgcggcgggcgcagaagcaggcccgcaac
gagtacaccggcgcgcgcggcgcgcggttcgcgatcttccccggctcgccgctgagcaag
aagccgccggcctggatcatggcgggagagctcgtcgagacgtcgcggctgtgggcgcgc
gacgtcgcccgcatccagcccgagtgggccgaggacctcgcgggcgacctcgcgcggcgc
acgtactccgagccgcactggtcgaccaagcgcggcgcggcgatcgcgaccgagaaggtg
ctgctgtacggcgtgccgatcgtcgcggaccgcaaggtcctctacgcgaaggtcgacccc
gaggccgcgcgcgagatgttcgtgcggcacgcgctcgtgcagggcgagtggacgacccac
caccggttcttccacgacaaccgcaagctcctcgccgaggcggaggagctcgaggcgcgc
tcgcgccagcgcgggctcgtcgtcgacgacgacgtgctgttcgacttctacgacgagcgc
gtgcccgacgacgtcgtgtccgccgcgcacttcgaccgctggtggaagacggcgcagcgc
cgcgaccccgacctgctcaccttcacgctcgaacagctcgtgcccgacgccgagcaggtc
gacacgtcgcagttccccgagacctggcctcagggcgagctgacgctcccgctcacctac
cagttccagcccgggaccgaggccgacggcgtgaccgtgcacgtcccgatctccgtgctc
aaccgcgtcgtccccgacgggttcgactggatggtgccgggcctgctcgacgagctcgcc
acggcgacgatccgctcgctgcccaagccggtccgtgtccagctcgtgccggcaccggac
gtcgcgcgcgacgtcgtcgcctggctccgcgagcacacgcccgcctgggaggacatggcc
cgcgcgggcgacatggccgagccgttccacgtcgcgttcacgcgcgccgtccgggcgctg
cgcgacgtcgtcatccccgacgacgcatggggccccgagcaggaggcgcgcctgcctgcg
cacctgcgcatgacgttccgcgtcgaggacacccgcgggcgcggcggctccgtcgtgctc
gacgagtcgaaggacctcctcgcgctccagcgccgtctcgccgcgcagaaccaggccgcc
gtccgcgcggcggtcaagggagcggtgggtgctgctcttcgtgaggccgcttcaggatcg
gttcccgggtcgggtgcgtcggtctcggggtcgggtgcgtcggtcccggggtcgggtccg
gcggcggagggggcgtcggtgctcgggctaccatccgcgccgctcgttcctcacggcgct
cccgccaggcccgccacgcccttcgcatccgacgccccctcccccgcctccgcgtccggc
tcacccgggcgaggtgcaggacgagcgggcggcgcgtcgtcgggcgcgacgggcgtcgag
gccgcgcgcggacatggacggccgaccgcaccaagtcacggcgcggccggcccgagcatc
gacggcacaccgcccgcgggctcgaccacgagcctggtgagcgagcgcaccgacctgacc
acctggcccgacgacctcaccgacgggcggctgcccgcgacggtgtcgaccgacctcggg
ggtggggtcgtggtgcgggggtacccggcggtcgtcgaggagcaggacgcgaaggggaag
ccggtcgtcgcgctgcgcgtgctggccgacgcgaccgcgcaggcgcgggagcacgcgcgg
ggtgtgcggcgtctgctgctgaccgagacggcgctgcagaccgggcgcatcacgagccgg
tggaacgggacgcagtcgctcacgttggcggccagcccctaccggaacacggacgcgctc
gtcgcggacctgcagctcgccgcggtgatcgcgctgacgagcggcggcagcgggcagccc
gacgcggccacgatcagagacgccgaggcctacgcggccgcgcgcacgttcgtccgcgcg
cacctggaggagcacgtgcaccaggtggtcgggcacgtggtcgccgcgctcaccgcgtcg
cggaacctcgacgcggagatccgcgcgtcgaacagcctcgcgctgctcaacacgctcacc
gacctgcgcgaccaggccgcgggcctgatccacgacggcttcgtctcgcagaccccgccc
cgacgcctgccgcacctgactcgctacctgcgggcggcgtcgtaccggctggagaaggcg
cagtcgaacccgaaccgcgacgccgagctcgcgtggcgcgtgcacgacgtcgaggacgcc
taccagcgcgcccgtgccgcgtacgcccagggcccggccgacccggtccgcgccgccgac
ctggccgaggtgcggtggctgatcgaggagctgcgcgtgtcgctgttcgcgcagcagctc
ggcaccgacggcccggtgagcgagaagcgcatccgcaagctcctcacacctgacggctgg
tga
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