Cellulosimicrobium sp. TH-20: B8281_08220
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Entry
B8281_08220 CDS
T04804
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cet
Cellulosimicrobium sp. TH-20
Pathway
cet03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B8281_08220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cet03400
]
B8281_08220
Enzymes [BR:
cet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B8281_08220
DNA repair and recombination proteins [BR:
cet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B8281_08220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
UB2H
CbiX
Motif
Other DBs
NCBI-ProteinID:
ARK04717
UniProt:
A0A1W6DPP1
LinkDB
All DBs
Position
1846961..1850713
Genome browser
AA seq
1250 aa
AA seq
DB search
MNLTGILPALLADQAAAAAVEHVRARGEADVVGPAGVRPPLLAAMAGARATGPVPDGDAP
ASGGGGGPAWAAGSRPLVVVTATGRDADELAASVRAYLPDELGDVVAVLPSWETLPHERL
SPRADTVAKRIAVFRRLAHPDPEVGPSGPVRVLVMPVRALLQPVVDGLGDLEPVELHAGT
TADLTDVAERLVAAAYTRVDMVERRGEFAVRGGILDIFPPTEDHPLRVEFWGDEVSEIRW
FAVADQRSLEIAEHGLWAPPCREILLTDSVRARAAALVEDLPGATEMLDRLAAGVAVEGM
ESLAPVLVDRMVPVLELVPDDALLVVDDAERVRRRAHDLVATTEEFLAAAWTGAVAGGKA
PVDLSAASFETFSEVRAVAQRRGLGWWTLSSFALDNPDLDVPPDADGSAAADAATSSGGA
GTTAAHVGESADGVPTFTLGARDVESYRGDVARALDDVRGLQHAGWRLVLTTEGHGPAKR
MVEQLGAADTPARLVPRLDDEPEGGIVLVTPAMVGKGFVAPGLRLAVFSEADLTGRAGTS
TRDMRKMPSRRRNVVDPLQLKAGDFVVHEQHGVGRFVELVQRTLGTGGNAATREYLVIEY
ASSKRGQPGDRLFVPMDQLDQVTKYTGGEAPSLNKMGGSDWAKTKSRARKHVKEIAGELI
RLYSARMATQGHAFGPDTPWQRELEDAFAYVETPDQLATIDEVKADMEKTVPMDRLVCGD
VGYGKTEIAIRAAFKAVQDGKQVAVLVPTTLLVQQHLETFSERYAGFPVTVKALSRFQTP
KESEEVVDGLAQGTVDVVIGTHRLITGSVRFKDLGLVIIDEEQRFGVEHKETLKQLRTNV
DVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPVLTYVGAYEEKQIAAALRRELLRE
GQVFYVHNKVETIERTAARLRELVPEARVGVAHGKMNEHQLDQVIRAFWEKELDVLVCTT
IIETGLDISNANTLILERADMLGLSQLHQLRGRVGRGRERAYAYFLYPPERPLTETAHDR
LATIAAHTDLGAGMQVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVANYRGD
GPEEQPEVSIELPVDAHLPESYIATERLRLEAYKKIAAAADAPELAEVRAELVDRYGALP
DVASALFDVADFRNHARRAGLTDVTAQGKFIRFAPVDLPESAQLRLKRLYPGTLLKPAIR
AILVPYPTTARIGGRPLRGAEVLGWARQLIDAVVLGEVSAAATVGTSSAR
NT seq
3753 nt
NT seq
+upstream
nt +downstream
nt
atgaacctcaccggcatcctgcccgcgctgctcgccgaccaggccgcggcggccgcggtc
gagcacgtgcgcgcccgcggcgaggccgacgtcgtcggcccggccggcgtccgcccgccg
ctcctcgcggcgatggcgggggcgcgcgcgacggggccggtgccggacggcgacgccccg
gcgtcgggcggcgggggtggcccggcgtgggccgcgggctcgcgcccgctcgtggtggtc
accgcgacggggcgcgacgcggacgagctggccgcgagcgtgcgcgcctacctgccggac
gagctgggcgacgtcgtcgcggtgctgccgagctgggagacgctgccgcacgagcgcctg
agcccgcgcgcggacacggtcgccaagcgcatcgcggtgttccgccgcctcgcgcacccg
gacccggaggtcggcccgtccggtcccgtccgggtgctcgtcatgccggtccgggcgctc
ctgcagcccgtcgtggacgggctgggggacctcgagccggtcgagctgcacgcgggcacg
acggcggacctcaccgacgtcgcggagcggctcgtcgcggcggcgtacacgcgcgtggac
atggtcgagcggcgcggcgagttcgcggtccgcggcggcatcctcgacatcttcccgccc
acggaggaccacccgctgcgcgtggagttctggggcgacgaggtgtcggagatccgctgg
ttcgcggtcgcggaccagcgcagcctggagatcgccgagcacgggctgtgggcgccgccg
tgccgcgagatcctgctcacggactcggtgcgggcgcgcgccgccgcgctggtggaggac
ctgccgggcgcgaccgagatgctcgaccggctcgcggcgggcgtcgcggtcgagggcatg
gagtccctcgcgccggtgctcgtggaccgcatggtcccggtgctcgagctcgtgcccgac
gacgcgctcctcgtcgtcgacgacgccgagcgcgtgcgccgtcgcgcgcacgacctggtg
gcgaccacggaggagttcctcgccgcggcctggacgggcgcggtggcgggcggcaaggcg
ccggttgacctctccgcggcgtcgttcgagacgttctccgaggtgcgcgcggtcgcgcag
cgccgcggtctgggctggtggacgctgtcgtcgttcgcgctcgacaaccccgacctcgac
gtcccgccggacgccgacgggagcgccgctgcggacgccgccacgtcgagcggcggcgcg
ggcacgacggccgcccacgtcggcgagagcgccgacggcgtgccgaccttcacgctcggc
gcgcgcgacgtcgagtcctaccgcggcgacgtggcgcgcgcgctcgacgacgtgcgcggg
ctgcagcacgcgggctggcggctcgtgctcacgacggagggccacgggccggccaagcgc
atggtcgagcagctcggcgcggccgacacgcccgcgcgcctcgtgccgcggctcgacgac
gagcccgagggcggcatcgtcctcgtcacgccggcgatggtcggcaagggcttcgtcgcg
ccggggctgcggctcgccgtcttctccgaggccgacctcacgggccgggccggcacgagc
acgcgcgacatgcgcaagatgcccagccggcgtcgcaacgtcgtcgacccgctccagctc
aaggcgggcgacttcgtggtgcacgagcagcacggcgtgggccgcttcgtcgagctggtg
cagcggacgctcggcacgggcggcaacgccgcgacgcgcgagtacctcgtgatcgagtac
gcgtcgagcaagcgtggccagccgggcgaccgcctcttcgtgcccatggaccagctcgac
caggtcacgaagtacacgggcggcgaggctccgagcctcaacaagatgggcgggtcggac
tgggccaagacgaagtcccgcgcgcgcaagcacgtcaaggagatcgcgggtgagctcatc
cgcctgtactcggcgcgcatggccacgcagggccacgcgttcggcccggacacgccgtgg
cagcgcgagctggaggacgcgttcgcgtacgtcgagacgcccgaccagctcgcgacgatc
gacgaggtcaaggccgacatggagaagacggtcccgatggaccggctcgtgtgcggcgac
gtcggctacggcaagacggagatcgcgatccgcgcggcgttcaaggcggtccaggacggc
aagcaggtcgcggtgctcgtgcccacgacgctgctcgtgcagcagcacctcgagacgttc
tccgagcggtacgcgggcttccccgtgacggtcaaggcgctgtcgcgcttccagaccccc
aaggagtccgaggaggtcgtggacgggctggcccaggggacggtggacgtcgtcatcggc
acccaccgcctcatcacgggcagcgtgcggttcaaggacctgggcctcgtcatcatcgac
gaggagcagcggttcggcgtcgagcacaaggagacgctcaagcagttgcggaccaacgtg
gacgtgctcgccatgtccgcgaccccgatcccgcgcacgctcgagatggccgtcacgggc
atccgcgagatgtcgacgctcgcgaccccgccggaggagcggcaccccgtcctcacgtac
gtcggggcgtacgaggagaagcagatcgccgcggcgctgcgccgcgagctcctgcgcgag
ggccaggtgttctacgtgcacaacaaggtcgagacgatcgagcgcaccgcggcgcggctg
cgcgagctcgtccccgaggcccgcgtgggcgtcgcgcacggcaagatgaacgagcaccag
ctcgaccaggtgatccgggcgttctgggagaaggagctcgacgtcctcgtctgcacgacg
atcatcgagacgggcctcgacatctccaacgcgaacacgctgatcctcgagcgcgcggac
atgctcggcctgtcccagctccaccagctccgcggccgcgtgggccgcgggcgcgagcgc
gcgtacgcgtacttcctgtacccgcccgagcggcccctcaccgagaccgcgcacgaccgc
ctcgccacgatcgcggcccacaccgacctcggcgcaggcatgcaggtcgccatgaaggac
ctcgagatccgcggcgcgggcaacctgctcggcggggagcagtccggccacatcgcgggc
gtcgggttcgacctgtacgtgcgcatggtgggggaggccgtcgcgaactaccgcggcgac
gggcccgaggagcagccggaggtctcgatcgagctcccggtcgacgcgcacctgccggag
tcctacatcgcgaccgagcgcctgcggctcgaggcgtacaagaagatcgccgccgcggcg
gacgcgccggagctcgccgaggtgcgggccgagctcgtcgaccgctacggggcgctcccg
gacgtcgcgtccgcgctgttcgacgtcgcggacttccgcaaccacgcccgccgggcgggg
ctcacggacgtcacggcgcagggcaagttcatccggttcgcgccggtcgacctccccgag
tcggcgcagctgcggctcaagcgcctctacccgggcacgctgctcaagcccgcgatccgc
gcgatcctcgtgccgtacccgacgacggcacgcatcggcggccgtccgctgcgcggcgcg
gaggtgctcggttgggcgcgccagctcatcgacgccgtggtgctcggcgaggtgagcgcg
gccgcgacggtggggacgtcgtcggcccgctga
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