Caprimulgus europaeus (Eurasian nightjar): 306730496
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Entry
306730496 CDS
T11931
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
ceur Caprimulgus europaeus (Eurasian nightjar)
Pathway
ceur04510
Focal adhesion
ceur04512
ECM-receptor interaction
ceur04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ceur00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
306730496 (COL2A1)
04518 Integrin signaling
306730496 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
306730496 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ceur00536
]
306730496 (COL2A1)
Glycosaminoglycan binding proteins [BR:
ceur00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
306730496 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
306730496
NCBI-ProteinID:
XP_079066532
LinkDB
All DBs
Position
30:<656430..675624
Genome browser
AA seq
1488 aa
AA seq
DB search
MPGRRPLRLAASFAFLLLLLTAAAAQDRDLPEAGSCLQDGQRYRDKDVWKPEPCRICVCD
TGTVLCDEIICEEPRDCPNPEIPFGECCPICPTDQPSGWHPGPKGQKGEPGDIKDVVGPR
GPPGPQGPAGEQGQRGERGEKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNF
AAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEPGEPGAAGPM
GPRGPPGPPGKPGDDGETGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAK
GEAGAPGAKGESGSPGENGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPGPV
GPAGAPGFPGAPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGAPGNPGTDGIPGAK
GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGDQGPKGETGPAGPQ
GAPGPAGEEGKRGARGEPGAAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPAGLG
GPKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGAPGEDGRPGPPGPQGARGQP
GVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAP
GPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPR
GLPGTPGTDGPKGATGPAGPNGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAP
GKDGARGLTGPIGPPGPAGPNGEKGESGPPGPSGAAGARGAPGERGEPGAPGPAGFAGPP
GADGQPGTKGEQGEPGQKGDAGSPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFP
GAAGRVGPPGPNGNPGPPGPPGAAGKDGPKGARGDAGAPGRAGDPGLQGPAGPPGEKGEP
GEDGPAGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSAGDRGPP
GPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGPVGAPGAPGAPGAPGPV
GPTGKQGDRGETGAQGPMGPSGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQ
GLPGPPGPSGDQGAAGPAGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGEPGPA
GPPGNPGPPGPPGPPGTGIDMSAFAGLGQTEKGPDPIRYMRADEAAGSLRQHDVEVDATL
KSLNNQIESIRSPEGSKKNPARTCRDIKLCHPEWKSGDYWIDPNQGCTLDAIKVFCNMET
GETCVYPNPSSIPKKNWWTSKTKDKKHIWFAETINGGFHFSYGDEDLAPNTANIQMTFLR
LLSTEGSQNVTYHCKNSIAYMDEETGNLKKAILIQGSNDVEIRAEGNSRFTYSVLEDGCT
KHTGKWGKTVIEYRSQKTSRLPIVDIAPMDIGGADQEFGVDIGPVCFL
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
atgcccggccgccgcccgctccgcctcgccgcctccttcgccttcctcctcctccttctc
accgccgccgccgcgcaggatcgagacctccccgaggcgggcagctgcctgcaggacggg
cagcgctatcgcgacaaggacgtgtggaagccggagccgtgccgtatctgcgtgtgcgac
acggggaccgtcctctgcgacgagatcatctgcgaggagccccgggattgccccaatccc
gaaatccccttcggagaatgctgccccatatgtcccactgaccagcccagcggttggcac
cctggccccaagggacagaagggtgaacccggtgacattaaagatgttgtaggaccccga
gggcccccgggaccgcagggcccggcaggtgagcaaggacagcgaggagagcgcggcgag
aaaggggagaagggtgctcccggcccccggggcagggatggagaacccggaacccctgga
aaccctggaccccccggcccccccggacctcctggcccccctggcctcggtgggaacttc
gcggctcagatggccgggggcttcgacgagaaggccggaggcgcccagatgggcgtcatg
cagggacccatgggccccatgggaccgcgtggccccccaggaccttctggtgctcctggt
ccccaaggatttcaaggcaaccccggtgaacccggcgagcccggcgctgctggtccaatg
ggtccccggggacccccgggacctcctgggaaacccggtgatgacggtgagacaggcaaa
cccggcaaatctggcgagcgcggcccccccggaccccagggcgctcgtggcttccccggg
acacctggtctccctggagtgaaaggccaccggggctatcctggcttggatggtgctaag
ggagaggcaggagctcctggagccaagggcgaatccggctcccccggtgagaatggctcc
cctggccccatgggtccccgtgggctgcctggagagagaggacgtcccggcccctctggt
gctgcgggtgctcgtggtaatgatggtctccccggcccggctggaccccctggacccgtc
ggcccagctggagcccctggcttccccggtgcccccggatcaaagggtgaagctggtccc
actggtgcacgaggtcccgagggtgcccagggtccccgcggtgaatctggcacccctggc
tctcctggccccgctggtgcccccggtaacccagggactgacggcatccccggtgcaaag
ggctcggcgggtgccccaggcattgctggcgctccaggcttccccggcccccgtggccca
cccggaccccagggtgccactggcccactgggacccaagggacagacgggagaacccggc
attgcaggcttcaagggcgaccagggacccaagggcgagacgggacccgcaggaccccaa
ggtgcccccgggccggctggtgaggaaggcaagagaggagcccgcggtgaacctggtgct
gctggccctgtgggaccacctggagagaggggtgctcctggcaatcgcggcttccctggg
caggatgggctggctggacccaagggtgctccaggtgagcgtggccctgctggcctcgga
ggtcccaaaggagccaccggtgaccccggacgtcccggagagcccgggctgcccggagcc
aggggtctcacgggccgccccggtgacgccggtcctcaaggcaaagtcggcccaaccggt
gctcctggcgaggacggccgccctggtccccccggcccgcagggtgctcgtggccagccc
ggcgtgatgggtttccctggtcccaaaggtgctaatggtgagcctggcaaagctggtgag
aaaggacttcctggtgccccagggctgcggggtcttcctggcaaggatggtgagacagga
gctgctgggcccccaggacctgctggtcccgctggtgagaggggagaacaaggagcccct
ggtccctccggcttccaggggctgcccgggccaccaggtccccccggagagggcggcaaa
cctggagatcagggtgttcctggagaagctggtgctcctggtctcgttggtcccagaggt
gaacgcggcttccccggtgagcgcggctctcccggcgcacaagggctgcaaggaccccgc
gggctccctggcacaccaggcactgatggacccaagggtgcaactggaccagccggcccc
aacggcgcccagggccccccggggctgcagggaatgcccggtgagagaggagcagctggc
atcgccggtcccaagggagaccgaggagacgttggagagaagggtcccgagggagctcct
ggcaaggacggcgcacgtggtctgacaggtcccatcggtcccccaggccccgctggccct
aacggcgagaagggtgaatctggccctcctggtccatccggcgctgccggtgcccgcggt
gcccctggtgagcgtggtgagcctggtgcccctggtcccgccggatttgctggccccccg
ggcgccgatgggcaacccggaaccaaaggtgaacaaggagagcccgggcagaagggtgac
gccggttctcctggtccccaaggtccctctggcgcacctggcccacagggtccaactggt
gtaactggtcccaaaggagcgcggggtgctcagggtccccctggagccaccggatttccc
ggcgctgccggccgcgtgggaccacctggccctaacggtaacccaggcccccccggtccc
cctggcgctgctggcaaagatggtcccaagggtgctcgtggcgatgccggtgccccgggc
cgtgccggtgaccctggtctccaaggccctgctggcccccctggcgagaaaggcgaacct
ggcgaggacggccccgcgggtcctgatggtccccccggtccccaaggtttggcaggacaa
cgtggcattgttggtcttcccggacagcgcggtgagagaggattccctgggctgccaggg
ccatcgggtgaacctgggaaacaaggagcacccggctctgcaggtgaccgtggacctcct
ggccctgtgggtccccctggtttgacaggtcctgctggtgaacctgggcgtgagggtagc
cccggtgctgatggaccccccggcagagacggcgcagccggtgtgaagggtgatcgtggt
gaaaccggccctgtgggtgcccccggtgctcccggtgcccccggtgctcccggccctgtt
ggtcccactggcaaacaaggagatagaggcgagacgggtgcacaaggtcccatgggtccc
tccggtcctgctggtgctcgaggcatgccgggtccccaagggcctcgtggtgacaaaggt
gagacaggagaggctggagagagagggctgaagggccaccgtggcttcaccgggctgcag
ggtcttcccggaccacccggtccttctggagaccaaggtgctgctggtcctgctggtccc
tccggtcccaggggtccccccggccccgtcggcccctctggcaaagatggctccaacggc
atgcccggccccatcggtccccccggcccccgtggacggagcggcgaaccaggtcctgcg
ggtcctcctggaaacccaggtcccccaggtccacctggccccccaggcaccggcattgac
atgtcagcttttgctggtctgggtcagacagagaagggtcctgaccccatccgctacatg
cgggcggacgaggccgccggcagcctgcggcagcacgacgtcgaggtggacgccacgctc
aagtccctcaacaaccagattgagagcatccgcagccccgagggctccaagaagaaccca
gccaggacctgccgtgacatcaagctttgccatcccgagtggaagagcggagactactgg
attgacccgaaccagggctgcaccttggacgccatcaaagttttctgcaacatggagaca
ggcgagacctgtgtctaccccaaccccagcagcatccccaagaagaactggtggaccagc
aagaccaaagacaagaagcacatctggttcgcagagaccattaatggcggtttccacttt
agctacggtgatgaagatctggctcccaacacagccaacatccagatgaccttcctccgc
ctcctgtccaccgaaggctcccagaacgtcacttatcactgcaagaacagcatcgcctac
atggacgaggagacgggcaacctgaagaaagccatcctcatccagggttctaacgacgtg
gagatcagagccgagggcaacagcaggttcacatacagcgtcttagaggatggctgcacg
aaacacactggcaaatggggcaagacagtcatcgagtaccgatcacagaagacctcgcgc
ctgcccattgtagatattgcacctatggacattggtggagccgatcaggagtttggcgtg
gatattggcccagtctgcttcttgtaa
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