Caprimulgus europaeus (Eurasian nightjar): 306731168
Help
Entry
306731168 CDS
T11931
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4 isoform 1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ceur Caprimulgus europaeus (Eurasian nightjar)
Pathway
ceur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ceur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
306731168 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ceur03019
]
306731168 (MTREX)
03041 Spliceosome [BR:
ceur03041
]
306731168 (MTREX)
03009 Ribosome biogenesis [BR:
ceur03009
]
306731168 (MTREX)
03016 Transfer RNA biogenesis [BR:
ceur03016
]
306731168 (MTREX)
Enzymes [BR:
ceur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
306731168 (MTREX)
Messenger RNA biogenesis [BR:
ceur03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
306731168 (MTREX)
Spliceosome [BR:
ceur03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
306731168 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
306731168 (MTREX)
Ribosome biogenesis [BR:
ceur03009
]
Eukaryotic type
Pre-60S particles
Helicases
306731168 (MTREX)
Transfer RNA biogenesis [BR:
ceur03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
306731168 (MTREX)
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
306731168
NCBI-ProteinID:
XP_079067404
LinkDB
All DBs
Position
Z:complement(62966918..63015495)
Genome browser
AA seq
1034 aa
AA seq
DB search
MADAFGDELFSVFEEASAAAASGAKKSKGGATEGARRPGKRSEEKSSVAVTGKPKREIEV
DSTEDAVLGKKPKLEDVVSEDANLAELMPQVKVQAVETVEGCTHEVALPADEEFTGLKPR
TGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT
SPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAW
VIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY
TDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDPKGRKGGT
KGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAI
DCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMG
INMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIG
KQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNNL
EGQYNKIAIPNEENVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNEGDD
FGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSRESLKNSATEAAKPARPDEKGEMQV
VPVLVHLLSAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQ
GLKKVIQKVEAFEHRMYSHPLHNDPNLETVYKLCEKKAQIAMDIKAAKRELKKARTVLQM
DELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFSDLSAEQATAL
LSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFRPNLMD
VVYTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGIT
KIKRDIVFAASLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcgttcggggacgagctcttcagcgtgtttgaggaggcctcggccgccgcc
gcctccggcgccaagaagagcaaagggggcgccaccgagggcgccaggagaccgggaaaa
cgatccgaggaaaaatcttcagtagctgtgacagggaagcccaaaagggaaattgaggtt
gatagtacagaagatgccgttcttggaaagaagccaaaattggaagatgttgtatcagaa
gatgctaatctggcagagttgatgcctcaagtaaaggtgcaagctgtggagactgttgaa
ggttgtacacatgaggttgcacttccagcagatgaagagttcacaggtctgaagccacga
actggaaaagctgcaaaagaatatccgtttattcttgatgcctttcagagggaagctatt
ctttgtgtagataataaccagtctgtgttagtgtcggctcatacatcagctggtaaaact
gtttgtgcagagtatgcaattgccctggctttgagggagaaacagcgtgtgatatttacg
agtccaattaaagctttgagcaatcagaagtaccgtgagatgtatgaagaattccaggat
gttggtttgatgactggggatgtcaccattaatcctacagcttcttgtctggtaatgaca
actgagattttgagaagcatgctctacagaggttctgaggttatgcgagaagtcgcatgg
gttatttttgatgagatccactacatgagagattcagagcgtggtgtggtttgggaagag
acaattattttgctccctgacaatgttcattatgtgttcctttctgcaactattccgaat
gcccgtcagtttgctgaatggatctgccatcttcacaaacagccttgccatgtgatttac
acagactatcgacccactccactgcagcattatatattcccagcgggaggagatggactc
catctggttgttgatgaaaatggagatttcagagaagataactttaatacagcaatgcaa
gtgcttagagatgcaggagacttagcaaaaggagacccgaaagggaggaaaggaggaaca
aaaggtccttcaaatgtttttaagattgtgaagatgatcatggaaaggaatttccaacct
gttattattttcagcttcagtaagaaagactgtgaagcctatgcacttcagatgacaaag
ttagatttcaatacagatgaagaaaaaaagatggtcgaagaagtgttcaataatgcaatt
gattgtctgtcagatgaagacaaaaagcttcctcaggttgagcatgttcttcctcttctg
aaacgaggaattggtatccatcatggtggtctgcttcctatcttaaaagaaaccatagaa
attcttttctctgagggcctaataaaggccttatttgcaacagagacttttgctatggga
attaatatgccagccaggactgtgctatttacaagtgccagcaaatttgatggaaaagat
ttccgatggatatcctcaggtgaatacattcaaatgtcaggtcgtgcaggacgccgaggt
atggatgacagaggaatagtaattcttatggtggatgaaaaaatgagtccaacaattggc
aagcagcttttgaagggttcagctgatcctttaaacagtgcgttccacctgacatacaac
atggtattgaacctgcttcgagtagaggagattaaccctgaatacatgttagaaaaatca
ttctatcagttccagcattacagaactattccagaaatagtagaaagagtgaataatttg
gaaggacaatacaacaaaatagcaattcccaatgaagaaaatgtggttatatactacaaa
atccgacagcagcttgcaaaactgggtaaagagattgaagaatatattcacaaaccaaaa
tactgcttgccctttctacagccaggaagactggtaaaggtcaagaatgaaggtgatgac
tttggatggggagtggttgttaatttctctaagaagtcaaacgttaagccaaattctggt
gaattggacccattatatgtagttgaggtgctactgcactgcagcagagagagtttgaaa
aattctgctactgaagctgcaaagccagccaggcctgatgagaaaggagagatgcaggtg
gttcctgttttggtacatcttctctcagctatcagcagcgtccgactttacataccgaaa
gacctgaggcctattgacaacaggcaaagtgtcttaaaatctatacaggaagtacagaag
cgatttcccgatggagtgccgttactggaccctatcgatgacatgggtatcaaagatcaa
ggactgaaaaaagtaatccaaaaagtagaagcatttgagcataggatgtattcacatcct
cttcacaatgatcccaacttggaaactgtatacaaactttgtgaaaaaaaggcacagatt
gctatggatattaaagcagccaaacgagaactgaaaaaagccagaactgtcttacaaatg
gacgagctcaagtgccgcaagcgcgttttgcgaaggctgggatttgccacgtcttcagat
gtcattgagatgaaaggacgggtcgcttgtgaaatcagcagtgctgatgaactacttctg
acagagatgatgttcaatggtctcttcagtgacttatctgcagaacaggcaactgcacta
ctaagctgttttgtatttcaagagaattccagcgaaatgccaaagctgacagagcagctg
gcaggaccgcttcggcagatgcaggagtgtgcaaaaagaatcgccaaggtgtccgcagaa
gcaaaactggaaattgatgaagaaaattacttaaattctttcagacccaacctaatggat
gttgtgtatacatgggcaaatggagccaactttgctcacatctgcaaaatgactgatgtc
tttgaaggtagcataatccggtgtatgagaagactcgaagaattgcttcgacagatgtgc
caggctgcaaaagccattggaaacacggagttggaaaataagtttgcagaggggattaca
aaaatcaagagagatatcgtatttgctgcaagcctttacctgtaa
DBGET
integrated database retrieval system
