Coprococcus eutactus: LK421_05245
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Entry
LK421_05245 CDS
T07943
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cev
Coprococcus eutactus
Pathway
cev03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cev00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LK421_05245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cev03019
]
LK421_05245
03400 DNA repair and recombination proteins [BR:
cev03400
]
LK421_05245
Enzymes [BR:
cev01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LK421_05245
Messenger RNA biogenesis [BR:
cev03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LK421_05245
DNA repair and recombination proteins [BR:
cev03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LK421_05245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
SecA_DEAD
Helicase_Sgs1
BChl_A
Motif
Other DBs
NCBI-ProteinID:
UEA80753
LinkDB
All DBs
Position
complement(1216222..1218249)
Genome browser
AA seq
675 aa
AA seq
DB search
MNLQETLKHYFGYDSLRSGQQELIDGILAGRDVLGIMPTGAGKSLCYQLPALMMEAAGRG
VTIVISPLISLMVDQVKALNQAGVHAAYINSTLTEGQIRKALEYAGQGRYTLMYVTPERL
GTAQFLDFAGKASLAMVTVDEAHCISQWGQDFRPSYLEIADFIDKLPVRPVVSAFTATAT
DIVRRDIVQNLRLESPVTIVTGFDRPNLFFKVVNRKGGRETDNSVLNYVKRHEGESGIIY
CATKKNVEKVHELLVAHGISAGRYHAGLSMEERKRSQEDFTYDRLSVMVATNAFGMGIDK
SNVRYVLHYNMPQSLEYYYQEAGRAGRDGEEAECVLFFSKQDIMINKRLLEHKVSSANAG
IDDDELRANDQRKLNQMIRYCETDQCLRQYILRYFGDESPCTCDKCSNCVVTEEETEQSY
ITDKRAVKKMAVMADLTDEGMELFELLRAGRLELARKQNVPPFIICSDKTLKDMCIKLPR
NSEDMKNVYGMGVQKTESYGETFAEIIDEFCLAHTEYVESMKEEALDSDNLGDLGTQGVE
SEKQRRKEKTVRKKEFYIDPNMLDDVEIVDECIVSELANRINELNQKQGITGMKKLTAAF
INGLLQQNGYIEELDMDDGSKTKRVTSKGAEIGIREEERKAKFGRRYYAITHSRESQKVI
ITLLKEYFSQDTVRE
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
ttgaatttacaggagacattaaaacactattttggatatgacagtctgagatcaggacag
caggagcttatagatggaatacttgcaggaagggatgtgcttggaattatgccaaccgga
gcaggtaagtcgctttgttatcaattgccggctttgatgatggaagccgccgggagggga
gtgacgatagttatctcaccgctaatatcacttatggtagatcaggttaaggcactgaac
caggcgggagttcacgctgcgtatatcaatagtacattgacagaaggacagatcagaaaa
gctttggaatatgccggacagggcagatatacactcatgtatgttaccccggagagactt
ggcactgcgcagtttctggattttgccggcaaggcaagtcttgcaatggtgacagttgat
gaggctcattgcatatcccagtggggacaggatttcagaccaagctatctggaaatagcg
gattttatagataagctgccagtgcgccctgttgtgagcgcgtttaccgctacagcaaca
gatatagtaaggcgggatatcgtccagaatcttagacttgaatctcctgtcacgattgtc
acaggatttgacagaccgaatctgttcttcaaggttgtgaacaggaaaggcggacgtgag
acggacaacagtgtattgaactatgtcaagagacatgagggagagagcgggatcatatat
tgtgctaccaagaagaatgtggagaaggtacacgaattgttggtggcacatggaatatct
gccggtcggtatcatgccggattatcgatggaggagcgcaagaggagtcaggaggatttt
acatatgacaggctcagtgtgatggtggcgacaaatgcatttggcatgggtattgataag
tcaaatgtgaggtatgtgcttcattataatatgccgcagagccttgagtattactatcag
gaggctggaagagccggacgtgatggtgaggaagcggagtgcgtactgttcttctcaaag
caggatatcatgataaacaagcgtttgctggaacataaggttagttctgcaaatgcaggc
atagacgatgatgaactgcgggcaaatgaccagcggaagctgaatcaaatgatacgttat
tgtgaaacggatcagtgcctgagacagtatatactgaggtattttggagatgaaagccct
tgcacatgtgacaaatgcagtaattgtgttgtgacggaggaagagacagagcagtcatac
ataactgacaaacgtgctgtgaaaaagatggcggtgatggctgatctgacagatgaggga
atggaactgtttgaacttctccgggctggacgcctggagcttgcaaggaagcagaatgtg
ccgccatttatcatttgttcggataagactctcaaggatatgtgcattaagttgccgaga
aacagtgaggatatgaagaacgtatatggtatgggagtgcagaagacggagagttatgga
gagacatttgcagagattatagacgaattctgccttgcacatacggaatatgtggagagc
atgaaagaggaagctttggattctgacaatcttggtgacttagggacacaaggtgtggaa
tcggaaaagcagcgcagaaaagagaaaacagtcaggaagaaagagttctatattgatccg
aacatgcttgatgatgtggagatcgtcgatgaatgtattgtttctgagctggcgaatcgt
ataaatgaactgaatcagaaacagggaatcacaggcatgaaaaagctgacagcggcattt
atcaatggtctgctacagcaaaatggctacattgaagaactggacatggatgatggcagc
aagacgaagcgggttacctcaaaaggggcggagattggaattcgtgaggaagagcggaaa
gcgaagtttggcagaagatattatgcaatcacacatagcagggagagccagaaggtgata
ataactctgcttaaggagtatttttcacaggatacggtgagggaatag
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