Coprococcus eutactus: LK421_09060
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Entry
LK421_09060 CDS
T07943
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cev
Coprococcus eutactus
Pathway
cev03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cev00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LK421_09060 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cev03400
]
LK421_09060 (mfd)
Enzymes [BR:
cev01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LK421_09060 (mfd)
DNA repair and recombination proteins [BR:
cev03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LK421_09060 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
Apolipoprotein
ERCC3_RAD25_C
RecG_dom3_C
MFD_D3
T1R_D3-like
Motif
Other DBs
NCBI-ProteinID:
UEA78958
LinkDB
All DBs
Position
2121599..2125159
Genome browser
AA seq
1186 aa
AA seq
DB search
MRVFQEPFEQLNIYRQIKDWLAAGDGFVDVIGSSMEGTDRVFLMNAVSDESSVKLVLTYS
DKRAEQLYSDLRFYSRDVYMYPAKDILFFSADVHGNAITRKRMDVLRRLVSGEPCTIVAT
VDALFDKIPALSYMNKYIINICTAQRLDVDDLRQKLSALGYDKVDNVEEPGQFAVRGGII
DIYPLTEECPYRIDMWDDEVDTIKTFDAESQRSIETVDSIVIYPAGEIVLSQDRINRGIR
KIEAELKPYAQKLKESFHTEAYARIKREVAELKEQLTEFSAVYGVDSYVDYFYSDTVSLI
DCLPDDSYVLIDETRKVSDRAATDETGFRSSMVHRLEGGYVLPGQMNVMYSYDDVIDKAK
KYNVVGFDAFDGRDDRISYAHKTEIECHEVHSYRNSFDTLVADIRSWKKNKNSVLFVSPS
SVGAKRMVDNLMDADIICHYLSDADKVLTPREIAAMAGRLRSGFMIPAMHLVVVSEGDVF
SSRSSSGKRTQKKLPYSGEIIKSFSDVSVGDYVVHEKYGIGVYKGIEKIEVDGALKDYLV
IEYAEGGKLYVLASETDRIQKYRSKEGRPPKINRLGGNEWQKVRNRVKGHVDEVAEHLVK
LYAERQSKEGHAYSPDSEWQKEFEETFPYKETDDQLRAIADVKADMESSRIMDRLVCGDV
GFGKTEVAIRAAFKAVGDSRQVAYLVPTTILAEQHYETFTERMKDYPVVIRLLCRFCTQK
EIKNTLRELKEGKVDIVIGTHRLLSKDVEFKNLGLLIIDEEQRFGVNHKEKIKEMKTNVD
VLTLTATPIPRTLHMSLVGIRDMSLLEEAPVDRRPIQTYVMEYDKELAREAIARELARQG
QVYYVYNRVNDIEQFTAEVQKLVPNANVEFAHGQMDGRTLEDIMYRFNKKEIDVLVCTTI
IETGLDIPNANTIIIHDANNFGLAQLYQLRGRVGRSDRSAFAFMFYRRNKVISEVAEKRL
RAIKEYTDLGSGVKISKADLNIRGAGSVLGESQSGNYEVVGYDLYCKMLNDAVRERRGDT
VFHDYETEIDIPIDSFIPETYVKNDFIKLELCKRISLIKNEDEYNDIIDELIDRFGDIPD
ETMNLLDAALLRARAYVCYITRIWYRDGLLRFSMYNKANINVDGIEDLVNNYMGRMKFQM
GAKPEFVLKLSKEEKRDILRQAEFVVADISQLLITSDNETKNGGTD
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgagagtatttcaggagccattcgaacaactgaatatatacagacagataaaggactgg
ctggctgccggcgatggatttgtggacgttatcggctcctcaatggagggaacagacagg
gtgtttctcatgaatgcagtgtctgatgagtcgtcggtgaaactggtgctgacgtacagc
gacaagagggcagagcagttgtacagtgacctcagattctacagcagggatgtgtacatg
tatccggcaaaggatatcctgttcttcagcgctgatgtccatggaaatgccataacgaga
aaacgtatggatgtactgcgaaggcttgtctcaggagaaccgtgcacgatagttgcaact
gtggatgctctttttgacaagatccctgcactttcatatatgaataagtatatcatcaac
atatgtactgcacagaggcttgatgttgatgatctcaggcagaaattatcagcgctcgga
tatgataaggtggacaatgtagaggagccaggtcagtttgcagtgagaggcgggatcata
gatatctatccactcactgaggagtgtccatacagaatagatatgtgggatgacgaggtg
gataccatcaagacatttgacgctgagagccagagatccatagagacggttgattcgatt
gtgatctaccctgcaggagagatagtgctgtcccaggatagaataaaccgtggaatcagg
aagattgaggcggaactgaagccgtacgcacagaagcttaaggagtcatttcacacggag
gcatatgcaaggataaaacgtgaggtggcggagcttaaggaacagctcacggagttcagt
gctgtgtacggagttgacagttatgtcgactatttttacagtgacacagtttcactcata
gactgtctgccggatgattcttacgtgctcatagatgagacgagaaaggtcagtgacagg
gctgcaacggacgagacgggctttagaagcagcatggtgcacagacttgagggcggctac
gtgcttcctggacagatgaatgtcatgtacagctatgatgatgtgatagataaggccaag
aagtacaatgtcgtaggatttgacgcgtttgatggcagggatgacaggataagttatgca
cataaaactgagattgaatgccacgaagtgcacagttacagaaacagttttgacacactt
gtagcggatataagatcctggaagaagaacaagaacagtgtgctctttgtgtcgccttct
tcggtgggtgcaaagagaatggtggataatcttatggatgcggatatcatctgtcattat
ctgagcgatgcggataaagtacttacccctcgtgagattgcagcgatggcgggaagactc
agatccggattcatgataccggctatgcatctagtggtcgttagtgagggcgatgtattc
tcaagcagatcatcgtcaggaaagagaacacagaagaagctcccatattcaggagagata
atcaagtcattttcggatgtcagtgtgggtgattatgtcgtacacgagaagtatggaata
ggagtctataagggtatagagaagatagaggtggacggcgcactcaaggattatctggtt
atagagtatgccgagggtggcaaactctatgtcctggcatcggaaaccgaccggatacag
aagtacaggagcaaggagggcagacctcctaagataaaccgccttggcggaaatgaatgg
cagaaggtcagaaacagagtcaagggacacgttgatgaggtggcagaacacctcgtcaag
ctgtatgccgagagacagtcgaaggaggggcatgcgtattctccggattctgagtggcag
aaggaatttgaggagaccttcccatataaggaaactgacgatcagctacgcgccatagcc
gatgtcaaggcggatatggagagcagccgtataatggaccggcttgtctgtggagatgtt
ggatttggcaagacggaggttgcaataagggctgcgttcaaggcggtcggggacagcaga
caggttgcgtatctggtgccaacgacgattctggcagaacagcactacgagacatttacc
gagagaatgaaggattatccggtggttataagacttctatgtagattctgtacgcagaag
gagataaagaatacactcagagaactcaaggaggggaaagtcgacatagtgataggaacc
cacagacttctgtccaaggatgttgagtttaaaaatcttggactcttgatcatagatgag
gagcagagatttggtgtcaatcacaaagaaaagataaaagagatgaagactaacgtggat
gtcctcacactcacagccacacctatcccgagaactcttcacatgagcctggttggaata
agggatatgagcctgcttgaggaggctccggttgacagaagacctatacagacatatgtt
atggagtacgacaaagagcttgccagggaggctatcgccagagagctggcgagacagggg
caggtgtattatgtatataacagggtaaatgatatagagcagtttactgcggaggttcag
aagctggtaccaaatgcaaatgtagaatttgctcatggacagatggatggacgaaccctt
gaggatataatgtatcgcttcaacaagaaggagatagacgttctggtctgcaccacgata
atagagacgggacttgacataccgaatgcgaatacgatcatcatccatgatgctaataat
ttcggacttgcacagctctatcagctgagaggacgtgtgggccgctctgatagaagtgca
tttgcattcatgttctatagaaggaacaaggtgatatctgaggttgcagagaagaggctc
agggcgataaaggagtacacagaccttggttctggcgtgaagatatccaaggcagatctc
aacataagaggtgcgggtagtgtgctcggggagagtcagtcgggcaattatgaggtggtc
ggatatgatctttactgcaagatgctcaatgatgcggtcagagagcgcaggggagacaca
gtatttcatgattatgagactgagattgatataccgatagattcatttatcccagaaaca
tatgtgaagaatgacttcataaaacttgagctctgtaagaggatatcactcatcaagaac
gaggacgagtataacgatataatagatgaacttatagacagattcggggacataccggat
gagactatgaatcttctggatgcggcgcttctcagggcgagagcgtatgtgtgttatata
accaggatatggtacagggatggattgctaagattttccatgtacaataaggcaaatata
aatgttgacggaatagaagatctggtgaacaattatatgggcaggatgaagtttcagatg
ggcgcaaagcctgaatttgtgttaaagctttcaaaggaggagaagagggatatactgaga
caggcagaatttgtcgttgcggatatctcacagcttctcataacctcagataatgaaacg
aagaatggaggcaccgattag
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integrated database retrieval system
