Cellulosilyticum sp. WCF-2: EKH84_02415
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Entry
EKH84_02415 CDS
T06333
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cew
Cellulosilyticum sp. WCF-2
Brite
KEGG Orthology (KO) [BR:
cew00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cew03016
]
EKH84_02415
Enzymes [BR:
cew01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
EKH84_02415
Transfer RNA biogenesis [BR:
cew03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
EKH84_02415
Prokaryotic type
tRNA splicing ligases
EKH84_02415
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF5915
Motif
Other DBs
NCBI-ProteinID:
QEH67349
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All DBs
Position
complement(551304..552539)
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AA seq
411 aa
AA seq
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MFVICEEEKTAKPIKIWVKDRESVEESCLEQAYNLSNLPFIHKWVALMPDTHTGMGMPIG
GVIAAKDVIIPHAVGSDIGCGMIFVETNIDAELLRTVETGNGILMQAIIGSIQRSVPVGR
AHHNKMQSSKVINEAMKNIEKYMKAPTLVPQIEDAYYQIGTLGGGNHFIEFQEDEEGKVG
IMIHTGSRHLGKEIGDYFNQIAKELNEKWYSSVPESYNLAFLPAKSDEGRLYLEYMNLAL
DFAEENREKILEAVMKEVTTLLKKQCDLDVTYANKLNVHHNYAAMEIHYGRNVWIHRKGA
IRAGAGERGIIPGSMGSYSYIVEGKGNAESFESCSHGAGRVYSRTKAKELYSVEKVMCDL
KEQAVILGKNNKKDVAEECRFAYKNIDEVIENQLDLITPIKKLKTIGVIKG
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgtttgttatttgtgaagaagaaaaaactgcaaaaccaataaagatatgggtgaaagat
agagaaagtgtagaggaaagctgcttagaacaggcatataatctttctaacttgcctttt
attcataagtgggtagctttaatgccagatacacacacaggtatggggatgcctataggt
ggtgttattgcagcaaaggatgtaattattccccatgcagtaggtagtgacattggatgt
ggtatgatttttgttgaaaccaatatagatgcagagcttttaagaacagtagaaacaggt
aatggcattttaatgcaagctattattggcagtatacagcgctcagtaccagttggaaga
gcacatcataataaaatgcagtcttccaaggtgattaatgaagcaatgaaaaatatagaa
aagtatatgaaagcaccaactttagtacctcagattgaagatgcttactatcaaatagga
acactaggaggaggcaatcattttatcgagtttcaagaagatgaagaaggtaaagtggga
attatgatccatacaggtagtcgtcaccttggaaaagaaataggggattacttcaatcag
attgccaaggagcttaatgagaaatggtatagctctgtaccagaaagctataatttagcc
tttttacctgcaaaaagtgatgaaggacgtttatatctagagtatatgaacttggcttta
gattttgcagaagaaaatagagaaaaaatacttgaggcagtgatgaaggaggttaccact
ttacttaaaaagcaatgtgatttagatgtaacttatgccaataagcttaacgttcaccat
aattatgcagccatggaaattcactatggtcgaaatgtttggattcaccgtaaaggggct
attagggcaggagcaggggaaagagggattatccctggttccatggggtcttatagttac
attgtagaaggaaaaggcaatgcagaaagttttgagtcctgctctcatggcgctggaagg
gtatattctagaacaaaagcaaaagagctttattcagtagagaaggttatgtgtgactta
aaagagcaagcagttatattaggtaagaataataagaaggatgtagcagaagagtgccgt
tttgcatataagaatattgatgaagtgattgaaaatcagttagatctaattacaccgatt
aaaaaattgaaaaccataggcgttattaaaggataa
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