Cellulosilyticum sp. WCF-2: EKH84_15900
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Entry
EKH84_15900 CDS
T06333
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cew
Cellulosilyticum sp. WCF-2
Pathway
cew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EKH84_15900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cew03019
]
EKH84_15900
03009 Ribosome biogenesis [BR:
cew03009
]
EKH84_15900
Enzymes [BR:
cew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EKH84_15900
Messenger RNA biogenesis [BR:
cew03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EKH84_15900
Ribosome biogenesis [BR:
cew03009
]
Prokaryotic type
rRNA helicases
EKH84_15900
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
YqaH
DUF2691
Viral_P18
WD40_Prp19
Motif
Other DBs
NCBI-ProteinID:
QEH69794
LinkDB
All DBs
Position
3524748..3525863
Genome browser
AA seq
371 aa
AA seq
DB search
MNFKTLGISPEMINHLKKSGITMPTPIQEQTIPLILSGKDVIGEAQTGTGKTLAFLLPLF
EKLSSKSPNIQALVLSPTRELAIQITQEAKKLAEAKAIGILPIYGGQDTAMQLKKLGKPV
HLVIATPGRLLDHIGRKSIDLSKTTTFVLDEADQMLLMGFKNDVESITKQLPKKRQTLCF
SATMDAPVKKLAYRYTSSPTTVTIAKKKITIEAIHQEIVETTDRHKQAALLQVLSEDNPY
MAIIFCRTKRRVEVLYEAMKDKDYNCVRLHSDILQSKRERIMKSFKKGDIQYLIATDVAA
RGLDISGVTHIYNYDVPETPEAYIHRIGRTGRAGNDGYTCMFMAPKNEKEVSEIEAHIRF
KIPRRILQDIL
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaaaacactagggatttcccctgaaatgataaatcacttaaaaaaatcaggt
atcacaatgccaacccctattcaagagcaaacaatcccccttattttatcaggaaaggat
gttattggtgaggcacaaacaggtacaggtaaaacattagcttttttacttcctcttttt
gaaaagctttcttctaaaagccctaacatccaagcccttgttttatctcctacaagagag
cttgctattcaaatcacccaagaagcaaaaaagttagctgaagctaaggctatcggcatt
ctacctatttatggtggacaagatacagccatgcagctaaagaaattaggaaaacctgtt
catttagttattgctacgccaggacgtttactagaccacattggcagaaaaagtattgat
ttaagcaaaaccactacctttgttttagatgaagccgaccagatgcttttaatgggcttt
aaaaatgacgtagaaagtatcactaagcagcttcctaaaaagcgtcaaaccttatgtttt
tcagctactatggatgcaccagttaaaaaacttgcttaccgctatacttcttctcctaca
actgtaacgattgctaaaaagaaaataactattgaagccatccatcaagaaattgtagag
accactgatcgtcataaacaagctgctcttcttcaggtattaagcgaagataatccttat
atggctattatcttctgccgcaccaaacgccgtgttgaagtgctttatgaagctatgaaa
gataaagactataactgcgtaaggcttcatagcgatattttacaatccaaaagagagcgc
atcatgaaaagctttaaaaaaggtgatattcaataccttatagctacggatgttgctgct
cgtggtcttgacatctcgggtgtcacccatatttataactatgatgtacctgaaacaccc
gaagcctatattcatcgtattggacgtacaggacgtgccggaaatgatggctacacttgc
atgtttatggctccaaaaaacgaaaaagaagtatctgaaatcgaagcacatatccgcttt
aaaatcccacgtcgcatacttcaagatatactttaa
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