Caldisericum exile: CSE_03190
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Entry
CSE_03190 CDS
T01804
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cex
Caldisericum exile
Pathway
cex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CSE_03190 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cex03019
]
CSE_03190 (pnp)
03016 Transfer RNA biogenesis [BR:
cex03016
]
CSE_03190 (pnp)
Enzymes [BR:
cex01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CSE_03190 (pnp)
Messenger RNA biogenesis [BR:
cex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CSE_03190 (pnp)
Transfer RNA biogenesis [BR:
cex03016
]
Prokaryotic type
tRNA degradation factors
CSE_03190 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
CvfB_2nd
DUF3892
KH_2
KH_KhpA-B
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
BAL80445
UniProt:
A0A7U6GDK6
LinkDB
All DBs
Position
308086..310212
Genome browser
AA seq
708 aa
AA seq
DB search
MIEKVSVEVGGKVIEFEVGRMAKQAGGAVFATCGGTQVLATSTMGDEPAEPTDFFPLTVD
YFEKMYAAGKIPGGFYKREGRPTDEEILGSRLIDRPLRPMFPIQFRRPVHIVVYVLSADG
SISPAILGINAASLASLISDEPFYEAVSAVKVGLIDGKFVINPDENDLDEKSLLDLSIAG
TKDALIMIESGSKEISEEMMLQAMQVALEEIKKISLVQEEFAKKIGKPKVEVQEVIIDEA
LKQEIESEILDKIKLALENKEKLTREKALEEIKKGIITEYEEKYPEKVSEVNMIFDLILR
NYIRSQTLQGNRIDGRKPDEIRPISIEVGVLKRTHGSALFTRGQTQVLSIATLGGKGEGQ
LIESLEEEVVTKRYMHYYNFPPFSVGEARPMRGPTRREIGHGALAERALVPVLPPEEEFP
YTIRVVSEVLESNGSTSMASTCGSTLALMDAGVPIKKPVAGIAMGLIKEGDQYVVLTDIQ
GAEDHLGDMDFKVAGTDAGITALQMDIKIKGITIDILRIALEQARKARLYILEKMKEVIP
APRPEISPYAPRVYTMQIRSDKIGLLIGPGGKTIRSIIGSTDSEINIEPDGKVYITAPNE
NILNTILERINQLLAEPEEGKIYEGVVVELKDFGALVQILPNYVGLLHISQIADKYIKDI
RKELHIGDKVKVKVIKIEEDGKIQLSKKAVDDGSKSSKSENKSKEQKE
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgattgagaaagtaagtgttgaagttggcggaaaggtaatagagtttgaagtaggcagg
atggcgaagcaagcaggaggtgccgtttttgcaacatgcggcggcactcaggtgcttgcc
acttctacaatgggagatgaacctgcagagccaacagactttttcccattgacggttgac
tatttcgaaaagatgtatgcagcaggaaaaatccctggagggttctataagagggaaggg
cgtcctaccgacgaagagattcttggctctcgccttattgatcgtcctttaagaccgatg
tttccaatccaattcagacgtccagttcacattgtcgtttacgttctttctgcggatggt
tctatttcgccagctattcttggaataaacgctgcatctttagcatctcttatttcagat
gagcctttctacgaggcagtttctgcggttaaagttggtcttattgacggtaaatttgtc
attaatcccgatgaaaatgatcttgatgaaaagagtcttcttgatttgagtattgcaggg
acaaaagatgcactcatcatgattgaatcaggttcaaaggaaatatctgaagaaatgatg
cttcaggcaatgcaggttgcattagaggagattaagaagatttctttagtacaggaagaa
tttgcaaagaaaattggaaagccaaaggttgaagtgcaagaagttatcattgatgaagcg
ttgaagcaggaaattgaatctgagatccttgataaaattaaacttgcccttgaaaacaaa
gagaaactcactcgtgaaaaagcacttgaagagatcaagaagggtataataaccgagtac
gaagaaaaatatcccgaaaaggtctcagaagtaaatatgatttttgaccttattttgaga
aattatataagatcacagacacttcaagggaatagaattgacggaaggaagccagatgaa
ataaggccaatctcaattgaagttggtgtcttaaagaggacacacggttcagctcttttc
acaagagggcagacacaggtactttctattgcaacgcttggtggtaaaggtgaagggcaa
ttgattgaatcccttgaagaagaagttgttacaaaaagatacatgcactactataacttc
ccgccattctcagttggtgaagcgcgtcccatgaggggaccaacacgaagggagattggt
cacggtgctcttgcagaaagagcacttgttccagttttaccaccggaagaggaattcccc
tatacgataagagttgtttctgaagtacttgaatcaaatggatcaacgtcaatggcttca
acgtgtggctcaacgcttgctcttatggatgcaggtgtgcccattaagaagcctgttgca
ggcattgcgatgggattaataaaagaaggtgaccagtatgttgtattaactgacattcaa
ggtgcagaagaccaccttggcgatatggattttaaagttgcaggaacagacgcaggtatc
actgcacttcagatggatataaagattaaaggtataacaattgatattttaaggattgcg
cttgaacaagcacgtaaggctcgcctttatatacttgagaaaatgaaagaagttattcct
gcaccacgcccagaaatttctccttatgcaccaagagtttacacgatgcaaattagatcc
gataaaattggtttacttatcggtcctggtggtaaaacaataagaagcatcatcggatca
actgattcagagataaatattgaacctgacggaaaagtttatattaccgcaccaaatgag
aatatccttaatacaattcttgaacgaataaatcaacttcttgccgagcctgaagaaggt
aaaatctacgaaggagttgttgttgaacttaaagattttggtgcgcttgttcagatactt
ccaaactatgtgggattattgcatatctcacaaattgcagataaatacataaaggatatt
agaaaagaactccatataggcgataaggtaaaagtaaaagttataaaaatcgaagaggac
ggtaaaatccaactcagtaaaaaggcagttgatgacggaagcaaaagttcgaaaagtgaa
aacaaatccaaggagcaaaaagaatga
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