Caldisericum exile: CSE_07090
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Entry
CSE_07090 CDS
T01804
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cex
Caldisericum exile
Brite
KEGG Orthology (KO) [BR:
cex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cex03016
]
CSE_07090
Enzymes [BR:
cex01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CSE_07090
Transfer RNA biogenesis [BR:
cex03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CSE_07090
Prokaryotic type
tRNA splicing ligases
CSE_07090
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BAL80835
UniProt:
A0A7U6GEC7
LinkDB
All DBs
Position
682851..684281
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AA seq
476 aa
AA seq
DB search
MEFKRVSPYKFVVEKHGNMRVDALLISSDKLIQYVEKDKALEQLLWVATLPGIVKYSIGM
PDIHQGYAFPIGGVGAFFYDGGVVSPGGVGFDINCGVRVIKTNLKYDYIKDSLEELGKTL
FKMIPAGLGSTSDYTFSIEESKRAMKLGLEWAVEKGFAKEEDIENIEDNGRLEADPDCVS
RHAIERGREEFGTLGAGNHFLEVDKVVEIYDKDLANAWGLYEGQIVVWMHTGSRGLGHQI
ATDYLDLMRPKMEKFGFKLVDRDSVYFPIQEDLSQRYLLAMGSAANFAWVNRQVLTYFVR
KAFSKVFGMDYEKLGMEILYDVAHNIAKQEQYEVNGKLETLLVHRKGATRSFPKGHPKLK
GKFKETGQPVLLPGDMKRGSYILVGSEKSIKETFGSVAHGAGRVLSRHQAVKQITFEDVQ
KELQREGILLYTNDKVVAREEAPLAYKSIDLVVEPIVNEGLANLVARSKPLIVIKG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggaatttaaaagagtaagcccttacaagtttgttgttgaaaagcacggaaacatgagg
gttgatgcgcttctcatttcttcggataagttaattcagtatgtggaaaaggataaggcg
cttgaacaacttctctgggttgcaactttacctggtattgttaaatattcaattggtatg
cctgatattcatcaaggatatgcttttcctattggaggcgttggtgcgtttttttatgat
ggaggagttgtttcgcctggtggggttggtttcgatattaattgtggagtgagagtcata
aaaacgaacttaaaatacgattacattaaggattcactagaagaacttggaaaaacatta
tttaagatgattcctgcaggtttaggctcaacttctgactatacatttagcatagaagaa
tcaaaaagagcgatgaaattagggcttgaatgggctgttgaaaagggttttgcaaaagaa
gaagacattgagaacattgaagataatggaaggctcgaggcggatcccgattgtgtaagc
aggcatgcaatagagcgtggacgtgaagagtttgggacgcttggtgcaggaaatcatttc
cttgaagtggacaaggtggtggaaatatacgataaagatcttgcaaatgcgtggggcttg
tatgagggtcaaattgttgtttggatgcatacgggttcacgtggtcttggacatcaaatt
gcaaccgactaccttgatttgatgcggccaaagatggagaagtttggatttaagttggtc
gatagagattcagtgtattttccaattcaagaagacttatctcaaaggtatcttcttgca
atgggtagtgcggcaaattttgcttgggtaaatagacaggttcttacatattttgttagg
aaggctttcagtaaagtttttggaatggactatgagaaacttggcatggagatactttat
gatgttgcgcataatattgcaaaacaggagcaatatgaagtaaacggaaagttggaaaca
ttacttgtacatcgaaaaggagcaactcgatcatttcccaaagggcatccaaaattaaaa
ggcaaatttaaagaaacagggcaaccggtccttctccctggcgacatgaaaagaggctct
tacattctagttgggagtgaaaaatccataaaagagacattcgggagcgttgcacatggt
gcaggaagggttttaagcagacaccaagcggtaaaacaaattacttttgaagacgtccaa
aaagaacttcaaagagaaggaattttactttatacaaatgataaagttgttgcaagagaa
gaagcgcctcttgcatacaaaagtattgatcttgtcgttgagccaattgtaaatgaagga
cttgcaaatcttgttgcacgttccaaaccacttatcgtgataaaaggatga
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