Caldisericum exile: CSE_08610
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Entry
CSE_08610 CDS
T01804
Symbol
rho
Name
(GenBank) putative transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cex
Caldisericum exile
Pathway
cex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CSE_08610 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cex03021
]
CSE_08610 (rho)
03019 Messenger RNA biogenesis [BR:
cex03019
]
CSE_08610 (rho)
Transcription machinery [BR:
cex03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CSE_08610 (rho)
Messenger RNA biogenesis [BR:
cex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CSE_08610 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
OB_RNB
NACHT
S1CSD-TOTE-2
Spore_III_AA
AAA_14
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAL80987
UniProt:
A0A7U6GEM2
LinkDB
All DBs
Position
complement(844513..845976)
Genome browser
AA seq
487 aa
AA seq
DB search
MDEILNLTENDLNAMTARELYKISQIVKLKNYSHYRKDELVKELYKQIQSLKQSSSNKRE
TAKEPTKETKTQTKRGTTEFQEQKTKEEKVEKQESLQEFLDTSKGTPETAYVRVDNEPQL
YFKGLFEAHPDGYGFLRANYFPSFTDIYVSPPLIRKFGLRTGDVVSGPVQRPQKEGERYP
ALVNVDTINGIKVTGYLKRPIFENLTPYYPTERIILETPGCNIALRVIDLIAPLGKGQRG
LIVSAPKAGKTTLMKEIAKSVVKNHPEIYLMILLIDERPEEVTDMKNSVAAEVVSSTFDQ
PPENHIRVVELALEKAKRLVEIGKDVMILLDGITRLTRAYNLLSSTSGKTLSGGLDPAAI
RGPKKFLGAARSILNGGSLTILATALIDTGSKLDQVIYEEFKGTGNMEIVLDRELAEERI
FPAIDIKKTGTRREELLYNEDEYRRILTLRKFIGSLEPGEALERLIEMLKQTRSNEELLR
SIVPDER
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaatcttaaacttaactgaaaacgatttaaatgcaatgactgcaagagaactt
tataaaatttctcaaatcgttaaattaaagaactattctcattatagaaaagatgaactt
gtaaaagaattgtataagcaaatacagagtttaaaacagtcctcaagcaacaaaagagag
actgcaaaagaaccaacaaaggagactaaaacacaaactaaaagaggaacaactgaattc
caagagcaaaagacaaaagaggaaaaagttgaaaaacaggaaagtcttcaagagtttctt
gatacttccaaaggaacacctgaaactgcctacgtgagagttgacaatgagccacaactt
tactttaagggactttttgaagcccatcctgacggatacggatttttaagagcaaattat
tttccatcattcactgatatttatgtctcacccccgttaattcgtaaatttggacttaga
acaggtgatgttgtttctggtcctgtccaaagaccacaaaaggagggggaaagatatcct
gctctcgttaacgttgatacaatcaatggaataaaagttacaggatatttaaagaggcct
atatttgaaaatcttacaccgtattatccaacagaaagaattattcttgaaacacccggg
tgtaatattgccttaagagttattgatctcattgcaccacttggaaagggtcagagagga
ctaattgtttctgcacctaaagctggaaaaacaacgcttatgaaagaaattgcaaaaagt
gttgtaaagaaccatccagaaatttaccttatgattcttctcattgatgagcgtccagaa
gaggttacagatatgaagaattcagttgcggcagaagttgtaagttcgacttttgaccaa
cctccagaaaatcacataagagttgttgaacttgccttagaaaaggcaaagagacttgtc
gagataggaaaagatgtgatgatactgcttgatggaataacaagacttacacgcgcttat
aaccttctaagttctacaagtggaaaaacactttccggaggccttgatcctgctgcaata
agaggaccaaagaagtttttaggtgctgcaagaagtatactgaatggcggtagtcttaca
attcttgcaacagcgctaatagatactggatcaaaattggaccaggtaatttacgaagag
ttcaaggggactggaaacatggagatagtccttgacagagaattagcagaagaacgaatt
ttccctgcgattgatattaaaaagacggggacaagaagagaggaacttctgtataatgaa
gatgaatatcgaagaattttgactttgagaaaattcataggttctcttgagccaggtgaa
gcacttgaaagactcattgaaatgcttaagcaaacaaggtcaaatgaagaacttttaagg
agtatagtgccagatgaaaggtaa
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