Caldisericum exile: CSE_12640
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Entry
CSE_12640 CDS
T01804
Name
(GenBank) hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cex
Caldisericum exile
Pathway
cex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CSE_12640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cex03019
]
CSE_12640
Messenger RNA biogenesis [BR:
cex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CSE_12640
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
Lactamase_B
RMMBL
Motif
Other DBs
NCBI-ProteinID:
BAL81390
UniProt:
A0A7U6GFE6
LinkDB
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Position
complement(1218900..1220198)
Genome browser
AA seq
432 aa
AA seq
DB search
MRIGFYGGVREIGGNIILMESNGVGIVFDFGRRFPTSQVFFNDTIKGRPEKGFEDYVDLG
ELPPFIGFYKSELPEEKSLPIEIGGLFFSHAHLDHIGQICYLSDSLKKFMTKGSFATLSY
FVEKGIVECMPSNIEIIDGKTIQIGDFKIMPYFIDHDIPGAVAYFVETPKGLVIYTGDIY
FKGVKSELSYRFVEYAKSLKPYILITEGTRIGWNGIVSNTEVELKEQIKEVANVFKGLII
GNVYEIHLARIETFYNAAVELDKKFIIHEDYANTLLKYGEFDRGALQILNAPNTFIYAPF
GSKLNLPKEKFITKEEFLANQNKEILLLNFNHITELLDIKPVVGSAYIMSGGEPLSSVDP
ANTKILENWLSKFNLPLFRIHSPGHASETEILWMAKEINPEILLPIHTQIPERFNVVHKN
VQILEKGVLTEF
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgagaataggattttatggtggtgtaagagaaattggcggaaatataattcttatggag
tcaaacggtgttggtattgtttttgattttggaagaaggtttcctacatcgcaagtcttc
tttaacgatacaattaaagggcgtcctgaaaaaggttttgaagactatgtagatttaggc
gaacttccgccttttataggtttttacaaaagcgaattgcccgaagaaaaaagtcttcca
atagaaattggcggattatttttctcacacgcacatcttgaccacattgggcaaatttgt
tatttgagcgattccttaaagaaatttatgaccaagggaagttttgcaacacttagttat
tttgttgaaaagggcatcgttgagtgtatgccttcaaatattgaaattattgacggaaaa
actattcaaattggcgattttaaaataatgccctactttatagaccatgatattcctggt
gcggttgcctattttgttgagacacccaagggattagtaatttatacgggggatatctac
tttaaaggtgttaaaagcgaactttcttatagatttgttgaatatgcaaaatctcttaaa
ccttacatcctcatcactgaaggaacccgtataggctggaatggaattgttagcaacact
gaggttgaacttaaggagcagattaaggaagttgcaaatgtatttaaaggacttattata
ggaaatgtttatgaaatccaccttgcaagaattgaaaccttctataacgcagcagttgag
cttgataaaaaatttattattcatgaagattatgcaaatacgcttcttaaatatggtgaa
tttgatcgaggcgcacttcaaatattaaatgcgcctaacacttttatctatgcaccattc
ggaagtaaacttaacttaccaaaggaaaagtttattacaaaagaggaatttcttgcaaat
cagaataaagaaattttattattaaattttaaccacattaccgaacttcttgatattaag
ccagttgtaggttctgcctatattatgtcaggtggagagccactttcatccgttgatcct
gcaaatacaaaaatattagaaaattggctttcaaaatttaatcttcctttatttaggatc
cactcaccagggcatgcttcagagacagaaatcctttggatggcaaaagaaataaatccg
gagatacttcttcctattcatacacagataccagagcggtttaatgtggtgcacaagaat
gttcaaatccttgaaaaaggtgtattgactgagttttag
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