Corallococcus exiguus: ACN6A2_05485
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Entry
ACN6A2_05485 CDS
T11255
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cexi Corallococcus exiguus
Pathway
cexi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cexi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ACN6A2_05485 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cexi03021
]
ACN6A2_05485 (rpoD)
Transcription machinery [BR:
cexi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACN6A2_05485 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_ner
Sigma70_r4
Sigma70_r1_2
FAP206
Motif
Other DBs
NCBI-ProteinID:
XWU94764
LinkDB
All DBs
Position
1430846..1432966
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AA seq
706 aa
AA seq
DB search
MPTQKPPKASVKPTKKKVDPVIRKKKAPDSPAAKVTKAAEPEEKELLAKDAPAEAPEKIK
KKKGVAAMADDVDPEEAAEEAAAAVQVDPDAVEDDVEEDPVAERKEVKDLLAAGREKGFL
TYDEVNDALPADIVSSDQIDDVMSMFGDNDIEIVDAQKAAQSNEIKPTVAVEEEKEDQDE
DEKDEDDEPGGKSNDPVRLYLRKMGSVSLLTREGEVEIAKRIEEGEKEVLRALLACRVAV
ADILDISNRLKTGKLRVRDVIKDAPEEAQTENAEEPAEEAAEGEAPAQLAQSELNKIEQI
SKQIERFRKFAKDCEVLEEELSGKKKLTEVRKKELKQEVKDLRTKMMEVLEEMRLNKKQV
DRIVVNLKGLIERVEKAEEELGDLERRYGVVMKDLRPQLKESRENPNIAKKLQKQLNFTP
EQLEVLDRDVRTAVRKIKRVEEEANLPVDALRRNYDAIRLGEKRAERAKSELVEANLRLV
VSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQEIGREPTPEEIAEKMELPLDKVRKVLKIAKEPISL
ETPIGEEEDSHLGDFIEDKSLVSPADAVINMNLAEQTRKVLATLTPREEKVLRMRFGIGE
KSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRSKRLRSFVES
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgccgacgcagaagccccccaaggcatccgtgaagcccaccaagaagaaggtggacccg
gtgatccgcaagaagaaggccccggacagccctgcggcgaaggtcacgaaggcagcggag
cccgaggagaaggagctgctggcgaaggacgcccccgccgaggcgcccgagaagatcaag
aagaagaagggcgtcgccgccatggccgacgacgtggaccccgaggaggccgcggaggaa
gccgccgccgccgtccaggtggacccggacgccgtggaagacgacgtggaggaggatccc
gtcgccgagcgcaaggaggtcaaggacctgctggccgcgggccgcgagaagggcttcctc
acctatgacgaggtgaacgacgccctccccgccgacatcgtgtcgtccgatcagatcgac
gacgtgatgagcatgttcggcgacaacgacatcgagatcgtggacgcgcagaaggccgcg
cagtccaacgagatcaagcccaccgtcgcggtcgaagaagagaaggaagaccaggacgag
gacgagaaggacgaggacgacgagccgggtggcaagtccaacgatcccgtccgtctctac
ctgcgcaagatgggcagcgtcagcctcctcacccgcgagggagaggtggagatcgccaag
cgcatcgaagagggcgagaaggaagtcctgcgtgcgctgctcgcctgccgcgtcgcggtg
gcggacatcctggacatcagcaaccgcctgaagacgggcaagctgcgcgtgcgcgacgtc
atcaaggacgcgcccgaagaggcccagacggagaacgcggaagagcccgccgaggaagca
gccgagggcgaggcccccgcgcagctggcgcagagcgagctcaacaagatcgagcagatc
tccaagcagattgagcgcttccgcaagttcgccaaggactgcgaggtcctggaggaggag
ctctccgggaagaagaagctcacggaggttcgcaagaaggagctgaagcaggaggtgaag
gaccttcggaccaagatgatggaggtcctggaggagatgcggctgaacaagaagcaggtg
gaccgcatcgtcgtgaacctcaagggcctcatcgagcgcgtggagaaggcggaggaggag
ctcggggacctggagcgccgctacggcgtggtgatgaaggacctgcgcccgcagctcaag
gagtcgcgcgagaacccgaacatcgccaagaagctccagaagcagctcaacttcacgcct
gagcagctggaggtcctggaccgcgacgtgcgcactgcggtgcggaagatcaagcgcgtg
gaggaggaagccaacctccccgtggacgcgctccgccgcaactacgacgccatccgcctg
ggcgagaagcgcgccgagcgcgccaagagcgagctggtggaggcgaacctgcgcctcgtg
gtctccatcgcgaagaagtacacgaaccgcggcctgcagttcctggacctcatccaggag
ggcaacatcggcctgatgaaggcggtggacaagttcgagtacaagcgcggctacaagttc
tcgacgtacgccacctggtggatccgtcaggccatcacccgcgccatcgcggaccaggcc
cgcaccatccgcatcccggtgcacatgatcgagaccatcaacaagctcatccgcacgagc
cgctacctcgtgcaggagattggccgcgagccgacgccggaagagatcgcggagaagatg
gagctgccgctcgacaaggtgcgcaaggtcctgaagatcgccaaggagcccatctccctg
gagacgcccattggcgaggaagaggacagccacctgggcgacttcatcgaggacaagagc
ctggtgtcgcccgcggacgcggtcatcaacatgaacctggccgagcagacccggaaggtg
ctggccacgctcacgccgcgcgaggagaaggtcctgcgcatgcgcttcggcattggcgag
aagagcgaccacacgctggaagaggtgggccaggacttcgaggtgacgcgcgagcgcatc
cgccagattgaagccaaggcgctgcgcaagctgcgtcaccccagccgctccaagcgcctg
cgctccttcgtggagagctga
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