Corallococcus exiguus: ACN6A2_12405
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Entry
ACN6A2_12405 CDS
T11255
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cexi Corallococcus exiguus
Brite
KEGG Orthology (KO) [BR:
cexi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ACN6A2_12405 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cexi03400
]
ACN6A2_12405 (ligD)
Enzymes [BR:
cexi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ACN6A2_12405 (ligD)
DNA repair and recombination proteins [BR:
cexi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ACN6A2_12405 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
DNA_ligase_OB_2
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
XWU96078
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All DBs
Position
3088807..3091371
Genome browser
AA seq
854 aa
AA seq
DB search
MKTSETQKRLRRYQTKRDFQLTPEPSPDVVAPRTSAPVFVIHKHDATRLHYDLRLEIGGV
LVSWAIPKGPSHDPSVKRLAVQTEDHPRSYADFEGHIPDDQYGGGDSLLWESGTFEVVPP
GDAEAQLKRGHLEVLLHGAKLKGRWHLIRTRPRGGKAQWLFFKAKDAYAKAGYDVTVERP
ESVKSGQVETQGPRKPGVLRDKKPAARLQKVVRKSAKAARPPKTPEQLLERVWPPMLARL
AVSDEVHDETHSYEVKYDGFRAVCALTKGKLAFQSRRGNDLTSRFGRLAASLRELPVRDV
VVDGEVVALDEKGRSRFQLLQHTEEGTEQRFMVFDLLWLDGEDLRELPYEERRARLEQLM
ADVKPPLQLSEKLDLPLSRALLEARRKGWEGIIAKRKDAPYTGTRSGDWLKLKVVAGQEV
VILGYLPIKNARAKSEIGALRVGVHGKNGFHDVGKVGTGYTSADRRELRWLLDATRVKKP
AAVDAPTNTDTVWVKPKYVAQVNFTEWTKDGRLRHPVFQGLRGDKVPKEVVREHPAPIEG
AARRGSRRAPMQAAARTAKAPAVKTPRGKQRAPEVALTHGERVLFPESGLTKADVFAYYE
QVAPLLLPVLADRPLAHQQWPAGIQAAGFFRHELSGIPTWMPTLRVRHEDKTLRHVNVKD
ASALLWLANQSALTLHMWLSHAPRLAQPDFVVFDLDPGEGGWKDVVKVATLLHARLDELG
LKGFPKTSGKRGLHVLVPLAPGHTYARTQAFANARARELEEELGDIATTERSIRARGGRL
YIDAGQNARGKTVVAPYSLRAVEGAPFSAPLDWSEVNGRLDPYRFRLKTLKKRLDAVGDL
FAPVLRVKQVLPDG
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
gtgaagacctccgagacccagaagcggctgcggcgttaccagacgaagcgcgacttccag
ctcacccccgagccgtccccggacgtggtggcgccgaggacgtccgcgcccgtcttcgtc
atccacaaacatgacgccacgcgcctgcactacgacctgcgcctggagattggcggcgtc
ctggtgagctgggccattcccaagggccccagccatgacccctccgtgaagcggctcgcg
gtccagacggaggaccacccgcgctcctacgcggacttcgagggccacatcccggacgac
cagtacggcggcggtgattcgctgctctgggagtccggcaccttcgaggtcgtgcctccc
ggcgacgccgaggcgcagctgaagcgcgggcacctggaggtccttctgcacggcgcgaag
ctcaagggacgctggcacctcatccgcacgcggccgcgcggcggcaaggcgcagtggctc
ttcttcaaggcgaaggacgcatacgccaaggccggctacgacgtcaccgtggagcgcccc
gagtccgtgaagagcggccaggtggagacacaagggcctcgcaagcccggcgtgctgcgc
gacaagaagcccgcggcgcgcctgcagaaggtcgtgcgcaagtccgcgaaggcggcgcgt
cccccgaagacgccagagcaactgctggagcgcgtgtggccgcccatgctcgcgcggctg
gcggtgtccgacgaagtgcacgacgagacgcactcctacgaggtgaagtacgacggcttc
cgcgccgtgtgcgccctcacgaaggggaagctcgccttccagagccgccggggcaacgac
ctgacgagccgcttcggccggctcgccgcttcgctgcgcgagctgcccgtgcgggacgtg
gtggtggacggagaggtggtcgcgctcgacgagaaggggcgttcgcgcttccagctcctg
cagcacacggaggaaggcacggagcagcgcttcatggtgttcgacctgttgtggctggac
ggcgaggacctgcgcgagctcccctacgaggagcgccgcgcgcggttggagcagctgatg
gccgacgtgaagccgccgctgcagctctccgagaagctggacctgccgctgtcgcgcgcc
ctgctggaggcgcggcgcaaggggtgggagggcatcatcgccaagcgcaaggacgcgccc
tacacgggcacgcgctccggggactggctgaagctgaaggtggtggcgggccaggaggtc
gtcatcctggggtacctgcccatcaagaacgcgcgggcgaagtcggagattggcgcgctg
cgcgtgggcgtgcacggcaagaacggcttccacgacgtgggcaaggtgggcacgggctac
acctccgcggaccgtcgcgagctgcgctggctgctggacgccacgcgcgtgaagaagccc
gccgccgtggatgcgcccacgaacacggacaccgtctgggtgaagccgaagtacgtggcc
caggtgaacttcaccgaatggacgaaggacggccgcctgcgccatcccgtgttccagggc
ctgcgcggcgacaaggtgccgaaggaggtcgtgcgcgaacaccccgcccccatcgaaggc
gccgcacgacggggctcgcggcgcgcgcccatgcaggccgccgcccgcaccgcgaaggcg
cccgccgtgaagacgccgcgtgggaagcaacgcgcgccggaggtggccctcacgcacggc
gaacgcgttctgttccccgagtccggcctgacgaaggcggacgtgttcgcgtactacgag
caggtggcgccgctgctgttgcccgtgctcgcggaccggcccctggcccaccagcagtgg
cccgcgggcatccaggccgcgggcttcttccggcacgagctgtccggcatccccacgtgg
atgcccacgctgcgcgtgcgccatgaggacaagacgctgcgccacgtgaacgtgaaggac
gcgtccgcgctcctgtggctcgccaaccagtccgcgctcacgctgcacatgtggctgtcc
cacgcgccacggctggcgcagccggacttcgtggtgttcgacctggaccctggcgagggt
ggctggaaggacgtggtgaaggtggccaccctgctgcacgcgcgcctggatgagttgggg
ctcaagggcttcccgaagacgtccggcaagcgcggcctgcacgtgctggtgcccctggcg
ccgggccacacctacgcgcgcacccaggcgttcgcgaacgcgcgggcgcgcgaattggag
gaggagctgggcgacatcgccaccacggagcgctccatccgcgcgcgcggcgggcggctc
tacatcgacgcgggacagaacgcgcgcggcaagacggtggtggcgccctactccctgcgc
gccgtggagggtgcgcccttctccgcgccgctcgactggagcgaggtgaacggccgcctg
gacccgtaccgcttccgcctgaagacgttgaagaagcgcctggacgccgtgggggacctg
ttcgcgcccgtgctccgggtgaagcaggtgctgccagacgggtga
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