Canis lupus familiaris (dog): 100685969
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Entry
100685969 CDS
T01007
Symbol
COL11A1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X2
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
cfa
Canis lupus familiaris (dog)
Pathway
cfa04820
Cytoskeleton in muscle cells
cfa04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100685969 (COL11A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100685969 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cfa00536
]
100685969 (COL11A1)
Glycosaminoglycan binding proteins [BR:
cfa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100685969 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
100685969
NCBI-ProteinID:
XP_005621911
Ensembl:
ENSCAFG00000019985
VGNC:
39456
UniProt:
A0A8I3NEE7
A0A8P0NQ23
LinkDB
All DBs
Position
6:50216773..50413293
Genome browser
AA seq
1806 aa
AA seq
DB search
MERRPSRWRTRRWPWGLTAAALALTCLLQAAGVGGAAPVDVLKALDFHNSPEGITKTTGF
CTNRKNSKDSDTAYRVSKQAQLSAPTKQLFSGGAFPEDFSILFTIKPKKGIQSFLLSIYN
EHGIQQIGVEVGRSPVFLFEDHTGKPAPEDYPLFRTVNIADGKWHRVAISVEKKTVTMIV
DCKKKTTKPLDRSERAIVDTNGITVFGTRILDEEVFEGDIQQLLIIGDPKAAYDYCEHYS
PDCDSSVPKAAQAQEPQIDEYAPEDIMEYDYEYGEAEYKEAEFVTETPTVTEETIAQTEA
NIVDDFQEYNYGTEESYQTVAPRHVSGPNEPNPVEEVFTEEYLTGEDYDSQRKNSEDTLY
ENKGIDGRDSDLLVDGDLGEYDFYEYKEYEDKPTSPTNEEFGPGVPAETDITETSINSHG
GYGEKGQKGEPAVVEPGMLIEGPPGPAGPAGLMGPPGLQGPTGPPGDPGERGPPGRPGLP
GADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRP
GPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDR
GFDGLPGLPGDKGHRGERGPQGPPGPPGEDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTP
GPTGQPGIAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKP
GLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEK
GEDGFPGFKGDMGLKGDRGEVGQVGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVP
GLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKP
GPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKT
GPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKD
GPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQ
GPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSK
GDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQ
GLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGVGEKGEPGEA
GNPGPPGEAGTGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPP
GEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAK
GEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLP
GLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPIGPP
GPPGLPGPQGPKGTKGSAGPAGQKGDSGLPGPPGPPGPPGEVIQPLPILSPKKTRRHAEN
MQADAGDNILDYSDGMEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDG
EYWIDPNQGCSGDSFKVYCNFTSGGETCIYPDKKSEGVRISSWPKEKPGSWFSEFKRGKL
LSYLDVEGNSINMVQMTFLKLLTASARQNFTYTCHQSAAWYDVSSGSYDKALRFLGSNDE
EMSYDNNPYIKALYDGCASRKGYDKTVIEINTPKIDQVPIVDVMINDFGDQNQKFGFEVG
PVCFLG
NT seq
5421 nt
NT seq
+upstream
nt +downstream
nt
atggagcggaggccgtctcggtggaggacgcggcggtggccctgggggctcaccgcggcc
gccctcgcgctgacttgcctcctccaggctgcaggggtcggcggagcggctccagttgat
gtactaaaagctctagattttcacaactctccagagggaataacaaaaacaacgggcttt
tgcacaaacagaaagaattcaaaagattcggacactgcttacagagtttcaaagcaagca
caactcagtgctcccacaaaacagttattttcaggaggagcttttccagaagatttttca
atactatttacaataaaacccaaaaaaggaattcagtctttccttttatctatatataat
gagcacggtattcagcaaatcggtgttgaggttggaagatcacctgttttcctgtttgaa
gaccacactggaaaacctgccccagaagactatcccctcttcagaactgttaacatcgct
gatggaaagtggcatcgggtagcaatcagcgtggagaagaaaactgtgacaatgattgtg
gattgtaagaagaaaaccacaaaaccacttgatagaagtgagagagcaatcgttgacacc
aatggaatcactgtgtttggaacaagaattttggatgaagaagtttttgagggtgacatc
cagcagctgctgatcataggtgaccccaaagcagcatatgactactgtgagcattatagt
ccagactgtgactcttcagtgcccaaggccgctcaggctcaggaaccgcagattgatgag
tatgcacctgaggatataatggaatatgactatgagtatggggaagcagagtataaggag
gctgaatttgtaacagagacacccactgtaactgaggagacaatagcacaaaccgaggca
aatatcgttgatgattttcaagagtacaactatggaacagaggaaagttatcagacagta
gctcctaggcatgtatctgggccaaatgagccaaatccagttgaagaagtatttactgaa
gaatatctaactggagaggattatgattcccagaggaaaaattctgaggatacactatat
gaaaacaaaggaatagacggcagggactctgaccttctggtagatggagatttaggcgaa
tatgatttttacgaatataaagaatatgaagataaaccaacaagccccactaatgaagaa
tttggtccaggtgttccagcagaaacagatatcacagaaacaagcataaatagccatggt
ggatatggagaaaagggacagaaaggagaaccagcagtagttgaacctggtatgcttatt
gaaggaccaccagggccagcaggacctgcgggtcttatgggtcctcccggtctacaaggc
cccactggaccccctggtgatcctggtgagaggggtcccccaggacgtcctggtttacca
ggcgctgatggtctacccggtcctcccggtaccatgttaatgttgccgtttcgttatgga
ggcgatggttccaaaggaccaaccatctctgctcaggaagctcaagctcaggcgattctt
cagcaggcccggattgctttgagaggtccacctggcccaatgggtctaactggaagaccg
ggtcctgtgggggggcctggttcatctggtgccaaaggtgagagtggtgacccaggtcct
cagggccctcgtggtgttcaaggtccacctggtccaacgggaaaacctggaaaaaggggt
cgtccaggtgctgatggaggaagaggaatgccaggagaacctggagcaaagggagatcgg
ggatttgatggacttccaggtctgccaggtgacaaaggtcacaggggcgaacggggcccc
caaggcccccctggtcctcctggagaagatggaatgaggggagaagatggagaaatagga
ccacggggtcttccaggtgaagctggtccacgaggtttgctgggaccaaggggaactcca
ggacctacagggcagcctggtattgcaggtgttgatggccccccaggaccaaaaggaaac
atgggtccccaaggggagcctggacctccaggtcagcaagggaatccaggacctcagggt
cttcctggtccacaaggtccaatcggtcctcctggcgagaaaggaccacaaggaaaacca
gggcttgcgggacttcctggtgctgatgggcctcctggccatcctggaaaagaaggccag
tctggagaaaaaggtgctctgggtcctcctggtccacagggtcctattggctaccctggt
ccccgaggagtaaagggagcagatggcgtcagaggcctcaagggttctaaaggtgaaaag
ggtgaagatggttttccaggattcaaaggtgatatgggtcttaaaggtgataggggagaa
gttggtcaagtaggtccaagaggagaagatggccctgaaggacccaaaggtcgagcaggt
cctactggagaccctggtccttctggtcaagcaggagaaaaggggaaacttggtgttcca
ggattaccaggatacccaggaagacaaggcccaaagggttccactggatttcctgggttt
ccaggtgccaatggagagaaaggtgcacggggtgtagctggcaaaccaggccctcggggt
cagcgtggtccaacgggtcctcgaggttcaagaggtgcgagaggtccaaccgggaaacct
ggcccaaagggtacttcgggcggtgacggtcctcctggccctcctggagaaagaggccct
caaggacctcagggtccagttggattccctggacccaaaggccctcctggaccccctggg
aaggatggcctgccaggacaccctggacaacgtggagagactggatttcaaggcaagact
ggccccccagggccagggggtgttgttggaccacagggaccaactggggagactggtcca
ataggtgaacgaggacatcctggccctcctggaccacctggtgagcaaggtcttcctggt
gctgcaggaaaagaaggtgcaaagggtgacccaggtcctcaaggtatctcagggaaagac
ggaccagcaggactacgtggtttcccaggtgaaagaggtcttcctggagctcagggtgca
cctggactgaaaggaggagaaggtccccagggcccaccaggtccagttggttcaccagga
gaacgtggatcagcaggtacagctggcccaattggtttgccagggcgtccaggaccccag
ggtcctcctggtccagctggagagaaaggtgctcctggagaaaaaggtccccaaggcccc
gcagggagagatggagtccaaggtcctgtgggtctcccagggcctgctgggcctgcgggc
tcccctggagaagatggagacaagggtgaaatcggtgaacccggacagaagggcagcaag
ggtgacaaaggagaaaatggtcctcctggtcccccaggtcttcagggtcctgttggcgcc
cctggaattgctggaggtgatggcgagccaggtcccagaggtcagcagggcatgtttgga
caaaaaggtgatgagggtgccagaggtttcccaggacctcctggtcccataggtcttcag
ggactgccaggcccgcctggtgaaaaaggtgaaaatggggatgttggtcccatgggtcca
cctggtcctccaggcccaagaggtcctcaaggtcccaatggagctgatggaccacaagga
cccccaggatccattggttcagtcggtggtgttggagaaaagggtgaacctggagaagca
gggaacccggggcctcctggggaagcaggcacaggcggccccaaaggggaaagaggagag
aaaggagaggctggcccgcctggtgctgctggacctcctggtgccaagggaccaccaggt
gacgatggccctaagggtaacccgggtcctgttggttttcctggtgatcccggtcctcct
ggagaacctggccctgcaggtcaagatggtgttggtggtgacaagggtgaagatggagat
cctggtcaaccgggtcctcctggcccatctggtgaggctggcccaccaggtcctcctgga
aaaaggggtcctcctggagctgcaggtgcagagggaagacaaggtgaaaaaggtgctaag
ggagaagcaggtgccgagggtcctcctggaaaaactggtccagtcggtccccagggacct
gccggaaagcctgggccagagggtcttcggggcatccctggcccagtgggagaacaaggt
ctccctggagccgcaggccaggatgggcctcctggtcctatgggacctcctggcttacct
ggtctcaaaggtgaccccggctccaagggtgagaagggacatcctggtttaattggcctg
attggacctccgggagaacaaggtgaaaaaggtgacagaggactccctggaactcaggga
tctccaggagcaaagggggatggaggaattccaggtcctgctggtcccataggtccacct
ggtcctccaggcttaccaggtcctcaaggtccaaagggaaccaaaggctctgctggacct
gccggccagaagggtgacagtggtcttccagggcctccaggacctccgggtccacctggg
gaagtcattcagcctttaccaatcttgtcacccaagaaaacaagaagacatgctgaaaac
atgcaagcagatgcaggggataatattcttgattactcggatggaatggaggaaatattt
ggttctctcaattccctgaaacaagacatcgagcatatgaagtttccaatgggtactcag
actaacccagcccgaacttgcaaagacctgcaactcagccatcctgacttcccagatggt
gaatattggattgacccaaaccaaggttgctcaggagattccttcaaagtttactgtaat
ttcacatctggtggtgagacttgcatttatccagacaaaaaatctgaaggagtgagaata
tcatcttggccaaaggagaaaccaggaagctggtttagtgaatttaagagaggaaaactg
ctttcctatttagatgttgaaggaaattccattaatatggtgcaaatgacattcctgaaa
ctgctgactgcctctgctcggcagaatttcacctacacctgtcatcaatcagcagcctgg
tatgatgtgtcatcaggaagttacgacaaagcacttcgattcctgggatcaaatgatgag
gagatgtcctacgacaacaacccttacatcaaagcactgtatgatggctgtgcgtccaga
aaaggctatgacaaaactgtgattgaaatcaatacaccgaaaattgatcaagtacctatc
gttgatgtaatgatcaatgactttggtgatcagaatcagaagtttggatttgaagttggt
cctgtttgtttccttggctaa
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integrated database retrieval system
