Canis lupus familiaris (dog): 100687160
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Entry
100687160 CDS
T01007
Symbol
SCAF4
Name
(RefSeq) SR-related and CTD-associated factor 4 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
cfa
Canis lupus familiaris (dog)
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfa03021
]
100687160 (SCAF4)
03041 Spliceosome [BR:
cfa03041
]
100687160 (SCAF4)
Transcription machinery [BR:
cfa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100687160 (SCAF4)
Spliceosome [BR:
cfa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
100687160 (SCAF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
100687160
NCBI-ProteinID:
XP_038317674
Ensembl:
ENSCAFG00000008863
VGNC:
53039
LinkDB
All DBs
Position
31:complement(26538227..26597009)
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AA seq
1134 aa
AA seq
DB search
MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKV
PGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKN
GVFKIEIIQPLLDMAAGTSNAAPVAENVTNNEGSPPPPVKVSSEPPQATTNSVPTVPQLP
SSDAFAAVAQLFQTTQGQQLQQILQTFQQPPKPQSPAIDNAVMAQVQAITAQLKTAPAQP
PEQKAAFPPPEQKTAFDKKLLDRFDYDDEPEAVEESKKEDAAATATATPTVAVAPPAPTA
TAPTTTPAASPPQAPFGFPGDGMQQPAYTQHQNMDQFQPRIMAIQQDPVHHQVPLPPNGQ
MPGFGLLPTPPFPPMAQSVIPPTPPVQQPFQASFQAQNEPLTQKAHQEMEVEQPCIQEVK
RHMSDNRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDRE
KERERRQKGLPQIKPETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGC
AYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKADYKQYWDVELGVTYIPWD
KVKPEELESFCEGGMLDSDTLNPDWKGIPKKHENEVAQNGGAETSHTEPVSPIPKPLPVP
VPPIPVPAPITVPPPQVPPHQPGPPVVGALQPPTFTPPLGIPPPGFGPGVPPPPPPPPFL
RPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPISIPNSTIAGINEDTTKDLSIGNPI
PTVVSGARGNAESGDSVKMYGSAVPPAAPTNLPTPPVTQPVSLLGTQGVAPGPVIGLQAP
STGLLGARPGLIPLQRPPGMPPPHLQRFPLMPPRPMPPHMMHRGPPPGPGGFGMPPPHGM
KGPFPPHGPFVRPGGMPGLGGPGPGPGGPEDRDGRQQQAQPQQPPPPQPQPQQPPPAQQP
PPAQQQPQPFRNDNRQQFNSGRDQERFGRRSFGNRVENDRERYGNRNDDRDNSNRERREW
GRRSPDRDRHRDLEERNRRSSGHRDRERDSRDRESRREKEENRGKEKPEVTDRAGGNKTV
EPPISQVGNVDTVSELDKGESESAVVKPSEELPAEATSSVEPEKDSGSAAEAPR
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgtcaacgccttcaaccaggagctcttttcacttatggatatgaaacctccc
atctctcgagccaagatgattcttatcactaaagctgctattaaagctattaagctttat
aagcatgtagttcaaatagtagaaaagttcatcaaaaagtgtaaaccagagtacaaggtt
cctggattatatgtaatcgactcaattgtacgacagtctcgtcatcagtttggaactgat
aaagatgtttttgggccaagattctctaaaaacataaccgccacattccaatatttatat
ctttgtccatctgaagataagagcaaaatagttcgtgtactgaacctttggcaaaaaaat
ggagtattcaaaattgaaattatccagccccttttggacatggctgcaggaaccagtaat
gctgccccagtagcagaaaatgttacgaataatgaaggttcacctccacctccagttaaa
gtttcttctgaacctccccaagccactacaaactctgtaccaactgtaccacagttgcct
agctctgatgcttttgctgctgtggcccagctctttcagacgactcaaggtcaacagctt
cagcagatccttcagacttttcagcagcctccaaaaccacagtctccagccattgacaat
gctgtgatggctcaggtccaggctatcacagctcagttaaagacagctcctgcacagcca
cctgaacaaaaagctgctttccccccacctgagcaaaaaactgcatttgacaagaagcta
cttgatagatttgattatgatgatgaaccagaagctgtggaagaatcaaagaaggaagat
gccgccgccactgccaccgccacacctactgtggcggttgctcctccagcgcccaccgcc
accgcgcccaccaccacacctgccgcttcccctccacaggcaccctttgggtttcctgga
gatggcatgcagcagccagcatatacacaacatcaaaatatggatcagtttcagcctcga
attatggcaatacagcaggatccagtgcaccatcaggttccacttcctcctaatggacag
atgccaggatttggccttcttcctacacctccatttcctcccatggctcagtctgtgatt
cctccaactccacccgtgcagcagcctttccaagcttctttccaggcacaaaatgaacca
cttacacagaaggcacatcaggaaatggaagtagaacagccttgtattcaagaggttaag
cggcacatgtctgataacagaaagtcaagatctaggtcagcatccaggtcaccaaaaaga
aggcgatctcgatctggctctagatctcgaaggtcccgtcatcgacgttctcgatctcgg
tccagagatagacgccggcattctcctagatctcggtcccaagaaaggcgagatcgagaa
aaagaaagagaacgccgacaaaaagggcttcctcaaatcaaaccagaaactgcgagtgtt
tgtagcactacactctgggtgggacagctggacaaaaggactactcaacaggatgttgcc
agtctcctagaagagtttggtccaattgaatcaattaatatgattcctcccagaggttgt
gcctatattgttatggttcataggcaagatgcttatcgtgccctgcagaaactgagccga
ggaaactataaagtgaaccagaaatccataaagattgcctgggctttgaacaaaggaata
aaggcagattataagcagtattgggatgtagaactgggtgttacttatattccatgggac
aaagtcaagcctgaagaactggagagtttttgtgaaggagggatgttggacagtgataca
cttaatccagattggaaaggaattcccaagaagcatgaaaatgaagttgctcaaaatgga
ggggcagaaacctcacatacagaaccagtatcacccatacctaaacctttaccagtgcct
gtccctcctattcctgttcctgcacctataacagtgccacctccacaggtcccaccacat
cagcctggtcctcctgtagttggtgctcttcagccgcccactttcacacctcctttgggc
attccccctcctggttttggccctggtgttcctcctccaccacctcctccaccatttttg
cgcccaggatttaatccgatgcatttgccaccaggtttccttcctcctggacccccacct
cctataactccaccagtatccattcctcctcctcacactccaccaataagcatcccaaac
tctactatcgctggtataaatgaagacactacaaaagacttatctattggaaatcccatt
ccaacagtggtgtctggggctagaggaaacgccgagtctggtgacagtgtgaaaatgtat
ggctctgctgtgccacctgctgcacccacgaatctgcccacccctcctgtaacccagcct
gtttcacttcttggtactcaaggagttgcccccggccctgtaattgggctccaggcacca
tccactggtcttcttggagcccgacctggcctgatcccacttcagcgccctccaggaatg
cctccacctcacttacagcgatttcccttgatgccacctcgtcccatgccaccacatatg
atgcatagaggtccacctccaggacctgggggctttggaatgcctccacctcacgggatg
aaaggcccctttccacctcatggcccctttgttaggcctggcggaatgccagggcttggg
ggcccagggccaggcccagggggtcctgaagacagagacggaaggcagcaacaagcacag
ccacagcagccgccaccgccacagccacagccgcagcagccgccaccagcgcagcagcca
ccaccagctcagcagcaaccacagccgtttagaaatgataacaggcagcagttcaattca
ggtagagaccaagagaggtttggaagaagatcttttggaaatagggtggaaaatgaccgg
gaacggtatgggaaccgtaatgatgatagagataatagtaatcgtgaaaggagagagtgg
ggaagaaggagccctgaccgggacaggcacagagacttggaagagagaaatagacgctct
agtgggcatcgagacagagagagagattctagagatagagagtctcgtagagaaaaggaa
gaaaaccgaggaaaggagaagcctgaggtgacagacagggcaggtggtaacaaaaccgtt
gaacctcccattagccaagtgggaaacgtagacactgtttcagaacttgataagggggag
tctgagtctgcagttgtaaaaccttctgaagagttacctgctgaggctacctcatccgtt
gaacccgaaaaggattctggctcagcagcagaggctcctcgttag
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