Canis lupus familiaris (dog): 100687399
Help
Entry
100687399 CDS
T01007
Symbol
SHOC1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog isoform X12
KO
K28108
shortage in chiasmata 1
Organism
cfa
Canis lupus familiaris (dog)
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cfa03036
]
100687399 (SHOC1)
Chromosome and associated proteins [BR:
cfa03036
]
Eukaryotic type
Meiosis-specific proteins
Others
100687399 (SHOC1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SHOC1_ATPase
SHOC1_PDDEXK
SHOC1_HhH_tandem
SHOC1_2HhH
Motif
Other DBs
NCBI-GeneID:
100687399
NCBI-ProteinID:
XP_013973395
Ensembl:
ENSCAFG00000003008
VGNC:
52491
LinkDB
All DBs
Position
11
Genome browser
AA seq
1506 aa
AA seq
DB search
MFSAFKYCAIDYLYETVVRKKFHRDALLLRIPSCLYQDGNYYGEVIDDKFRRPWMRVSAV
SVWGMTDTSVLDQWKASLFVEEFLEKKTVTGMMTEIDYGFEEIVPSSNPNSPIEIEEASL
YTDTDYNEVFTPIGGLEKCSTLQTQNKDLYIDEEILFVNNLMTYKSQLPTVHTLLSRLKP
FLIKDPILDFKEQIFTEANFFREHFSFQGDLKSLVKEDFYMHKENFCQEKLEDTPSILSE
CEFLISTSSKQEADIPSLSELKESLNLVPEIINYADENELFKRDLTAKHGSDIEDIKCSS
TEILAIQSHCEPEYSEPVELEMPLTHLHLTNQPSSVTSLCTRLQTFPFSPVCKINLLSAE
ESAHKYWMMWQLESCRSSLNPFLFTVPRTEEPRSQCSVTDLKKIFSIEEESLVVNPISTE
WWKEGGLNLIETETLELLNTYLSGNDLSSSDTTMEIFLPTKLLQLESSLEHKSCSSPIEL
IDEKSTNDHLLLSQNISSPAKEVSDLCFSDDNLSVKQPTKEENPKNDLEPVYRISENKEN
EDYLELDCAVPSDELSSSPKIEKASFKHGKKWENDLDLLSDFIMLRNKYKTCTSKTEVTG
NKENDEFQDKEEPSLTLQEASPIVCTHKALEKMNQERRADNVIEIQASDSQCQAFCLLEA
AATPIFKKLECLCTLPAADWTFATVIFDQTRFFLKEQEKVISDAIQQGTNHEKEMTFKHA
ALLHLLVTIRDVLLTCGLDTALGYLSTAKDIYRNILGSYLDDIWRQLEIIQFIREKNPET
NYKIQELQCQILNWMQSEQQIKVLIIIRMDSDGEKHLLIKILNKMEGLTLTVIHSNKRKD
VLESEGVLNGTSSCIIVHNQHIGADFPWTNFSFVVEYNFVENSCWTEHCKKLNIPHRAFK
VILPDTVLKRSTLLDSFGGFLLEIQVPYVFFASEGLLNTPEILQLLESKYNITLVERCCS
ESLKLFGGTECYVVVTIDEHTAVMLQDLEELNCEKASDNIIMRLLALSFQYSYCWIILYT
KKTLNSEYHLTEKTLHHLALIYAALVSYGLKSEELDVKLIIAPGVEEAALIIRQIADHNL
MTSKRDPQEWLDKSWVEVSPSKEEMYLLDFPSINPLVAQLMLNKGPSLHWMLLATLGQLQ
ELLPEVPEKVLKHFCSITSLFKISSSSITNSPQSPSPQENGNQTNTLTSQSSASGSSNSV
FQEHNEFYHYSDIGETVYEDTNSTSNSKSSLMELREMPCVLPPMTSYSQASYWKDSSCNA
NIVHNPFLINTESRTVTGNSFQNQNDSESDVFYLDLTQMSCENITSPIDTQKRVAPNFIS
YQEKGTHDAKGPIKKGAYASNFSLEGAQSPLPWNFKKNVWKQQNHSFNLEYGADQTTCDK
WFSQKDNLFTNQQKYPSDELEGLIYESSNDETKKTFWKELPSVPSLDFFCAADPNVNQKE
FSSLYFHQGAGKCLGQKRHSESSSNSGDKKSLPDFMCSQLPQFKKRRLVYEKVPGRADGQ
TRLRFF
NT seq
4521 nt
NT seq
+upstream
nt +downstream
nt
atgttttcagcattcaaatattgtgcaatagactatttatatgagactgtagttagaaag
aagtttcacagagatgccttactgcttcgaatcccttcatgtttatatcaagatggaaat
tattatggagaagttattgatgacaagtttaggaggccatggatgagagtttcagctgtt
tcagtgtggggaatgacagatacctcagtcttggatcaatggaaagcaagtctctttgtg
gaggagtttctagagaaaaaaacagttacaggaatgatgaccgagattgactatgggttt
gaggaaattgttccaagttcaaacccaaactctccaatcgaaatagaggaagccagttta
tatactgatacagactataatgaagtctttacacctattggcggtttagaaaaatgttca
acacttcaaacacagaacaaagatttatatattgatgaagaaatactttttgtaaataac
ttgatgacatataaaagtcagctaccaactgtgcatactctgttgagtaggctaaaacca
tttttgataaaggaccccattttagatttcaaagaacagatcttcacagaagctaatttc
ttcagggaacatttctcatttcaaggagatttgaaaagtcttgtgaaagaagatttttac
atgcataaagagaacttttgtcaggaaaagctagaagatacaccatcaattttgtctgag
tgtgaattcttaatatctacaagctccaaacaagaagctgatattccatcactctccgaa
ctgaaggaatcattaaacttagttccagaaataataaattatgcagatgaaaatgaactt
ttcaaaagagatcttactgccaagcatggaagtgacattgaggatataaaatgcagctcc
acagaaattttggccattcaaagccattgtgaaccagagtatagtgaaccagtggagtta
gaaatgccattaactcatctacatctaacaaaccaaccttcttccgtgacttcattatgt
acaagacttcagacatttccattttctcctgtttgtaaaattaatttgctttctgctgaa
gaatcagctcacaagtactggatgatgtggcagttagaaagctgcagaagctctttgaac
ccatttttgtttacagtgccaagaactgaagagccccgcagccaatgttcagttacagat
ttgaaaaagatattttctattgaagaagaaagccttgtagttaatcctataagcacagag
tggtggaaagaaggaggactaaatctgatagaaacagaaactttggaacttctgaatacg
tatttgtctggtaatgatttatcttctagtgatactacaatggagatatttttgccaaca
aaactacttcaattagaatcatcgctagaacataaaagttgttcctcacctattgaactt
attgatgagaaatctacaaatgatcatttattactttcacaaaatatttcatctccagca
aaagaagtatcagacttgtgtttttctgatgataatttatctgttaagcaaccaacaaaa
gaagaaaacccaaagaatgatctagaaccagtttacagaataagcgaaaataaagaaaat
gaagattacttggaacttgactgtgcagtaccatctgatgaattatcttcctctccaaaa
attgaaaaagcatcttttaaacatggtaaaaaatgggagaatgatttggatcttttgagt
gactttattatgctgagaaataaatataagacttgtacctccaagactgaagtcacaggc
aataaagaaaacgatgaatttcaagataaagaagaaccttctttgactcttcaggaagca
agtcctattgtttgtactcataaagctctagagaaaatgaatcaggaaaggagagcagat
aatgtcattgaaattcaagcatcagatagccagtgccaagcattctgtctcctagaagca
gcagctactcctatctttaaaaagcttgaatgcctctgtactctccctgctgctgattgg
acatttgccactgtcatttttgaccaaacaaggttcttcttaaaggagcaagaaaaagta
ataagtgatgctattcagcaaggtacaaaccatgaaaaagaaatgacgtttaaacatgct
gctctcttacatcttctggtaacaattagagatgtccttttaacgtgcggcttggacaca
gcattgggatatttgtcaactgcaaaagatatctacagaaacattttaggctcctatttg
gatgacatttggagacaattggagatcatacagtttattagggaaaaaaatcctgaaacc
aactacaagatacaagaactacaatgtcagatactaaattggatgcaaagtgaacaacag
attaaggtgctgattataataagaatggactcagatggtgaaaagcatttactcatcaaa
attcttaacaaaatggaaggtttaacattgactgtcatacattcaaacaaaaggaaagat
gttctggaatctgaaggtgttttaaatggtacaagttcctgcataattgtacataatcaa
catattggagcagatttcccatggactaacttctcatttgtggtggaatacaattttgta
gagaactcctgttggaccgaacactgcaagaaattgaatattcctcacagggccttcaaa
gtgattcttccagacacagttttaaagagaagtaccttgctggatagttttggtggtttt
cttctggaaattcaggttccatatgtgttttttgcatctgaaggacttcttaatactcca
gaaatacttcagttgctagaatccaaatataatatcacactagtggaaagatgctgcagt
gagtcattgaaactctttggaggtacagagtgttatgtggtggtgacaattgatgaacac
actgccgtaatgttgcaggacctagaagaattgaattgtgagaaggcatcagacaatatc
attatgagactgttggcattatcattccagtacagctattgttggataatcttatatacc
aaaaaaacattaaactcagagtaccatctaacagaaaaaacacttcatcatctagcactg
atttatgcagctttggtatcatatgggctaaaatcagaagaactggatgtaaagcttata
attgccccaggagtggaagaggctgcactgataattcgacaaattgctgatcacaattta
atgacctcgaagagagatcctcaagaatggttggataaatcctgggttgaagtctcacca
tcaaaggaggaaatgtatttacttgattttccatctattaacccactggtggctcagctc
atgttaaataaaggaccttcactgcactggatgttattagcaactctgggtcaacttcag
gagcttttacctgaagttccagaaaaagtgttaaagcatttttgcagcatcacttcctta
ttcaagattagttcttcatccataacaaactcacctcaaagtccatcacctcaggaaaat
gggaatcagactaatacccttacctcccagagttcagcttctggctcttcaaactctgtc
tttcaagaacataatgaattttaccactattcagacataggagagacagtgtacgaagat
acaaacagtacttcaaactctaagtcttcacttatggaactaagagaaatgccatgcgtt
ttaccacctatgacttcttacagtcaagccagttactggaaagattccagttgtaatgct
aacatagtacataatcctttcctgattaatacagaatcaagaactgtgactggtaactcc
tttcaaaaccagaatgattcagagtcagatgtcttttatttggatctaacacaaatgagc
tgtgaaaacataacatcaccaattgacactcagaagagagttgcccctaattttataagt
tatcaggaaaagggaacacatgatgcaaaagggcctataaaaaaaggagcatatgcctct
aacttttctctagaaggcgctcaatctcctcttccctggaactttaagaaaaatgtatgg
aaacaacagaatcactcattcaacttagagtatggtgcagatcagactacatgtgacaaa
tggttctctcagaaagataatttattcactaatcagcaaaaatatccatcggatgagtta
gaaggcctcatatatgaaagttcaaatgatgagactaaaaagactttttggaaagaatta
ccatctgtccctagtttggatttcttttgtgctgctgatcctaatgtaaatcaaaaagaa
ttcagcagtctttatttccaccaaggagctggaaaatgtttaggacagaaaaggcactct
gaatcctcatctaactcaggagacaagaaatcattaccagatttcatgtgctcacaacta
ccacaattcaaaaaacggcggctagtgtatgaaaaagtccctggtagagctgatggacaa
actcgtctgaggtttttttga
DBGET
integrated database retrieval system
