Canis lupus familiaris (dog): 100687767
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Entry
100687767 CDS
T01007
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
cfa
Canis lupus familiaris (dog)
Pathway
cfa04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100687767 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cfa04147
]
100687767 (COL18A1)
00535 Proteoglycans [BR:
cfa00535
]
100687767 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
cfa00536
]
100687767 (COL18A1)
Exosome [BR:
cfa04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
100687767 (COL18A1)
Proteoglycans [BR:
cfa00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
100687767 (COL18A1)
Glycosaminoglycan binding proteins [BR:
cfa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100687767 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
100687767
NCBI-ProteinID:
XP_038317720
VGNC:
49781
LinkDB
All DBs
Position
31:38143980..38184998
Genome browser
AA seq
1487 aa
AA seq
DB search
MARHPGRCLLLLLLLTCCPAAAQVDLLSLNWLWSTRTAGPTAEPVSEAPGSPHVQPRDET
GTPVTPQPGPTEQGNAPASPEPPLRGLETDEHAASAAPSAPPAGPDPKEEKEENIAGVGA
KILNVAQGIRSFVQLWDDTTRPESSSTAGTPAPVTPTSPLALPGPSRPPPENGTALWLGS
TDAPRVEASTLPAPTRLPPSLDRPRAALREPSGPPPSPESRGSEVGLLQLLGEPPPQQVT
QVDDPDVGPAFVFGPDANSGQVARYHVPSPFFRDFSLLMHVRPATEGPGVLFAITDAAQA
VVSVGVKLSGVRDGQQHVQLLYTEPGAARTRTAASFRLPAFTGQWTRLALSVDGATVALF
VDCELFQRVPLERSPGGLQLEPGAGLFVAQAGGADPDKFQGMIAELRVRGDPHVSPLHCL
EEDDDDSGGVSGDFGSGLEDDREPSGLLPKAELPEAPPVTSPPLTGGRDVEDSRMEEIEE
EATASPLGARTLPGSATVTAESAQRLGGSLQEAPTGPAAHNPEAWPGPGPQGPPGPPGPP
GKDGTPGRDGEPGDPGEDGRPGDPGPQGFPGTPGDVGPKGEKGDPGVGPRGPPGPQGPPG
PPGPSFRHDKLTFIDMEGSGFGGDLESLRGPRGFPGPPGPPGVPGLPGEPGRFGMNSSDV
PGPAGLPGVPGRDGPPGLPGAPGPPGPPGKEGGPGKPGPKGSPGDAGAPGPKGSKGDPGP
IGVPGESGLAGPPGPAGPPGPPGPPGPPGPGLAAGFVDMEGSGEPFWSTAHGASGPQGPP
GLPGVKGDPGIVGPPGAKGEVGADGPPGFPGLPGREGTAGAQGPKGEKGTQGEKGEPGRD
GVGQPGLPGPPGPPGPVVYVSEQERAATGVPGPEGRPGHAGFPGPAGPKGDLGSKGQWGP
PGPKGEKGEPGPAFSPDGSMLAPAQKGAKGEPGFRGPPGPYGRPGHKGEIGFPGRPGRPG
MNGLKGEKGEPGQASAGFGMTGPPGPPGPPGPPGPPGTPVYDSNAFMEPGHPGPPGLPGH
QGPSGPKGDKGDVGPPGPPGQFPFDLLQLGAEMKGEKGDRGDAGQKGERGEPGGGGFFGS
SVPGPPGPPGYPGIPGPKGESVQGHPGPPGPQGPPGIGHEGRRGPPGPPGPPGPPGPPSF
PGPYRQTISVPGPPGPPGPPGPPGTMGTSSGQVRIWATYQTMLDKVPDVPEGWLMFVAER
EELYVRVRNGFRKVLLEARVPLPRGTDNEVAALQPPVVQLHEGNPYPRREPTHATARPWR
ADDILASPPRLLDPQPYPGAPHHGSYVHFQPARPTGGPVHTHTHTHQDFQPVLHLVALNS
PQPGGMRGIRGADFQCFQQARAAGLAGTFRAFLSSRLQDLYSIVRRADRTGVPVVNLRDE
VLFPSWEALFSGSEGQLKPGARIFSFDGRDVLQHPAWPRKSVWHGSDPSGRRLTDSYCET
WRTEAPAATGQASSLLAGRLLEQEAASCRHAFVVPCIENSVMTSFSK
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atggctcgccaccccggccgctgcctgctgctgctgctgctgctcacctgttgccctgcg
gccgcccaggttgacctactgagcctgaactggctgtggtccactaggaccgccgggccc
acggccgaaccggtgtcggaggccccggggagcccacatgtgcagcccagagacgagacc
ggcacgcctgtgaccccccagcccggccccacggagcagggcaatgcccccgccagcccg
gagccgcctctgcgggggctggagaccgacgagcacgcggcctccgccgcaccctctgcc
ccccccgcgggcccggacccgaaggaggagaaggaggagaacatcgccggcgtgggagcc
aagatcctgaacgtggctcagggcatccggagcttcgtccagctgtgggacgacaccacg
cgcccggagagctccagcacggccgggacgcccgcccccgtgacccccaccagccccctc
gccctcccggggccctcccggccccccccggagaacgggacggctctctggctgggcagc
acggatgccccgcgcgtggaggccagcaccctgccggcgcccacccggctgcccccctcc
ctggacaggccccgggcagcgctcagggagccctcggggccgccgccttctccagagagc
cggggctcggaggtggggctcctgcagctgctgggagagcccccgccccagcaggtcacc
caggtggacgaccccgacgtggggccggccttcgtcttcggcccggacgccaacagcggc
caggtggcccggtaccacgtccccagcccgttcttccgtgacttctcgctgctcatgcac
gtgcggccggccaccgagggcccgggggtgctgtttgccatcacggacgcggcccaggcg
gtggtctccgtgggcgtgaagctgtcgggcgtgcgtgacgggcagcagcacgtccagctc
ctgtacacggagcccggggccgcccggacccgcacggccgccagcttccgcctgcccgcc
ttcaccggccagtggacgcgcttggcgctcagcgtggacggcgcgacggtggcgctgttc
gtggactgcgagttgttccagagggtgcccctggagcgctccccggggggcctgcagctg
gagcccggcgccggcctgttcgtggcccaggcgggaggagcggaccccgacaagttccag
gggatgatcgcggagctgagggtgcgtggggacccgcacgtgagccccctgcactgcctg
gaggaggacgacgacgacagcggcggggtgtccggagacttcgggagcgggctggaggac
gaccgggagccgtcgggtctgctccccaaagccgagctccccgaggctcccccggtcact
tctccgcccttgactggaggcagggacgtggaagattccagaatggaagaaatcgaggaa
gaagccacggcgtccccgttgggagctcggaccctccccggctcggctacagtcactgca
gagagcgcccaacgccttgggggcagcctgcaggaggctcctacaggccctgcggcgcac
aaccctgaagcatggccgggacccgggccacagggccccccgggccccccagggccgccg
gggaaggatggcacccctggaagggacggtgagccgggggatcccggtgaggacgggagg
ccgggtgaccctgggccgcagggcttccccggaaccccgggagacgtgggccccaagggc
gagaagggcgaccctggggtcgggccaagaggacccccaggaccccaagggcctccaggg
ccaccaggaccctccttcagacacgacaagctgaccttcattgacatggagggttccggg
ttcggcggtgacctggagagcctccgaggccccagaggcttccccggcccccctgggccc
cccggcgtcccaggcctgcccggagagccaggccgcttcgggatgaacagctcggacgtc
ccaggccccgcaggccttcctggtgtccccgggcgggacgggccccctggacttcccggc
gccccgggaccgccaggccctccggggaaagaaggaggaccagggaagcccggcccgaaa
ggcagccccggtgacgcgggcgccccaggacctaagggaagcaagggtgaccccggcccc
atcggcgttccaggggagagcggcttggcaggaccccccgggccggctggaccgccaggg
ccccccggacccccggggccaccgggaccaggactggccgcggggtttgttgacatggaa
ggctcgggggaacccttctggtcgacggcgcacggagccagcgggccgcagggaccgcca
ggcctgcccggggtcaagggggaccctgggatagtgggaccaccgggcgccaagggagaa
gtcggcgcagatgggcctcccgggttccccggcctccctggcagagagggcacggccgga
gcgcagggacccaaaggagaaaaagggacccagggagagaaaggcgagccagggagggac
ggagtggggcagcctgggctccccggaccccccggacccccggggcccgtcgtctacgtg
tcagagcaggagagagcggcgacaggcgtgccgggacccgagggccggccgggacacgcg
ggctttcctggtccggccgggccgaagggagatctgggctccaaaggccaatggggcccc
ccagggcccaagggcgagaagggcgagccgggcccggcgttcagccccgacggcagcatg
ctggcccccgcccagaagggggccaagggagaacccggcttccgaggccccccgggtccc
tacgggcggccggggcacaagggagagatcggcttccctgggcggccgggtcgccccggg
atgaacggactgaagggggagaaaggggagccaggacaggccagcgccggcttcggtatg
acgggtccacccggtcccccagggcctccggggcccccaggccctcctgggactcccgtc
tatgacagcaacgcatttatggagcctggccaccccggacctccaggattgccagggcac
cagggaccttctggaccaaagggtgacaaaggagacgtgggccctccaggaccaccaggc
cagttccccttcgacctcctccagctcggggctgagatgaagggggagaagggcgaccga
ggcgacgccgggcagaagggcgagcgcggtgagcccggggggggcgggttcttcggctca
agcgtgcccggcccccccggccccccgggctaccccggcatcccgggtcccaagggagag
agcgttcagggccatcccggcccccctggacctcagggtccccctggcatcggccatgag
gggcgtcgggggcctcccgggccccccggcccccccgggcccccaggacccccttccttt
cctggcccttacaggcagactatcagtgtccccggcccccccggaccccccgggcctccc
ggcccccctggaaccatgggcacgtcctcagggcaggtgcgcatctgggccacgtaccag
acgatgctggacaaggtgccggacgtgccggagggctggctcatgtttgtggccgagagg
gaggagctgtacgtccgggtccggaacgggttccggaaggttctgctggaggcgcgggtg
ccactcccacgcgggacggacaacgaagtggccgccttgcagccccccgtggtgcagctg
cacgagggcaacccatacccccggcgggagcccacccacgccacggcgcggccctggcgg
gcagatgacatcctggccagccccccgcgcctgctggacccccagccctaccccggggcc
ccgcaccacggctcctacgtgcacttccagccggctcgccccactggtgggcctgtccac
acccacacccacacccaccaggacttccagccggtgctgcacctggtggccctgaacagc
ccgcagccgggcggcatgcgaggcatccggggagcggacttccagtgcttccagcaggcg
cgcgccgcggggctggccggcaccttccgggccttcctgtcgtcgcggctgcaggacctc
tacagcatcgtgcgccgcgccgaccgcaccggggtgcccgtcgtcaacctcagggacgag
gtgctcttccccagctgggaggccttattctcgggctccgagggccagctgaagcccggg
gcccgcatcttctctttcgacggcagagatgtcctgcagcaccccgcctggccccggaag
agcgtgtggcacggctccgaccccagcgggcgccgcctgaccgacagctactgcgagacg
tggcggacggaggccccggcggccaccgggcaggcgtcgtcgctgctggcgggcaggctg
ctggagcaggaggccgcgagctgccgccacgccttcgtggtgccctgcatcgagaacagc
gtcatgacctccttctccaagtag
DBGET
integrated database retrieval system
