Canis lupus familiaris (dog): 100856310
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Entry
100856310 CDS
T01007
Symbol
VPS16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog isoform X1
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
cfa
Canis lupus familiaris (dog)
Pathway
cfa04140
Autophagy - animal
cfa04148
Efferocytosis
cfa05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
100856310 (VPS16)
04148 Efferocytosis
100856310 (VPS16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
100856310 (VPS16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cfa04131
]
100856310 (VPS16)
Membrane trafficking [BR:
cfa04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
100856310 (VPS16)
Hops complex
100856310 (VPS16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Motif
Other DBs
NCBI-GeneID:
100856310
NCBI-ProteinID:
XP_003639898
Ensembl:
ENSCAFG00000006534
VGNC:
48278
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All DBs
Position
24:complement(18230648..18253873)
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AA seq
839 aa
AA seq
DB search
MDCYTANWNPLGDSAFYRKYELYSMDWDLKEELRDCLVAAAPYGGPIALLRNPWRKEKAT
SIRPVLEIYSASGLPLASLLWKSGPVVSLGWSAEEELLCVQEDGVVLVYGLHGDFRRHFS
MGNEVLQNRVLDARIFHTEFGSGLAILTGAHRFTLSANVGDLKLRRMPEVPGLQSAPSCW
TTLCQDRVAHILLAVGPDLYLLDHAACSAVTLPGLALGVSSFLQMAVSFTYRHLALFTDT
GYIWMGTSSLKEKLCEFNCNIRAPPKQMVWCSRPRSKERAVVVAWERRLMVVGDAPESIQ
FVLDEDSYLVPELDGVRIFSRSTHEFLHEVPVASEEIFKIASMAPGALLLEAQKEYEKES
QKADEYLREIQELGQLTQAVQQCIEAAGHEHRPDMQKSLLRAASFGKCFLDKFPPDSFVR
MCQDLRVLNAIRDYHIGIPLTYSQYKQLTIQVLLDRLVLRRLYPLAIQICEYLRLPEVQG
VSRILAHWACYKVQQKDVSDEDVARAINQKLGDTPGVSYSDIAARAYGCGRTELAIKLLE
YEPRSGEQVPLLLKMKRSKLALSKAIESGDTDLVFTVLLHLKNELNRGDFFMTLRNQPMA
LSLYRQFCKHQELETLKDLYNQDDNHQELGSFHIRASYAAEERIEGRVAALQTAADAFYK
AKNEFAAKATEDQMRLLRLQRRLEDELGGHFVDLSLHDTVTTLILGGHSKRAEQLARDFR
IPDKRLWWLKLTALADLEDWEELEKFSKSKKSPIGYLPFVEICMKQHNKYEAKKYASRVG
PEQKVKALLLVGDVAQAADVAIEHRNEAELSLVLSHCTGATDGATADKIQRARAQAQKK
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atggactgctacacggcaaactggaacccgctcggggactctgccttttaccggaaatat
gagttgtacagcatggactgggacctgaaggaggaactcagggactgcttggtagctgct
gcgccctatggaggccctattgctctattgaggaacccatggcggaaggagaaggctaca
agcatacggccagtgcttgagatctactctgcttctggcctgcctctggccagtctgctg
tggaagagtgggcccgtggtgtccctcggctggtcagctgaggaggagctgctctgcgtg
caggaagatggtgtagtactggtttacggacttcatggtgacttccggagacacttcagc
atgggcaatgaggtgctccagaaccgagttctagatgcccggatcttccatactgagttt
ggttcagggttggccatcctcaccggggcccaccgcttcaccctcagtgccaacgtggga
gatcttaagcttcgccggatgccagaggtgccaggtctgcagagtgcaccctcatgctgg
accacactgtgccaggaccgagttgcacacattcttctggctgtggggcctgatctttac
ctcctcgaccacgcagcctgctccgcagtgacgctccctggcctggccctaggagtgagc
agcttcctgcagatggctgtctccttcacctaccgacatctggcactcttcacagacaca
ggctacatctggatggggacatcatcactcaaggagaagctgtgtgagttcaactgcaac
atccgggcccccccgaagcagatggtctggtgcagccgtcctcgcagcaaagagagggct
gtcgtggtggcatgggagaggcgtctaatggtggtgggtgatgcacccgagagcatccaa
tttgtgctggatgaagactcctacctggtgcctgagctggatggggtccgcatcttctct
cgtagcacccacgagttcctgcatgaggttccagtggccagcgaggagatcttcaaaatt
gcctcaatggcccccggggcactgttgttggaggcccagaaagagtatgagaaagagagc
caaaaggcagatgagtacctacgggagatccaggagctgggccagctgacccaggccgtg
cagcagtgcattgaggctgcgggacatgagcaccggccagacatgcagaagagtctgctc
agggcggcctcctttggaaagtgtttcctcgacaaatttccacctgacagcttcgtgcgc
atgtgtcaggacctgcgtgtgctaaatgccattcgggactatcacatcggaatccccctc
acttatagccaatataagcagctcaccatccaggtgctgctggacaggcttgtgttgcgg
aggctttaccccctggcgattcagatttgcgagtacctgcgccttcctgaagtgcagggt
gtcagcaggatcctggcccactgggcctgctataaggtgcaacagaaagacgtgtctgac
gaggatgttgctcgggccattaaccagaaactgggggacacaccaggcgtctcttactct
gacattgctgcacgggcctatggatgtggccgcacagagctggccatcaagctgctggag
tatgagccacgctctggggagcaggtaccccttctcctaaagatgaagaggagcaaactg
gcactgagcaaggctatcgagagtggggacactgatctggtgttcacggtattgctgcac
ctgaagaatgagctcaaccgaggagattttttcatgactcttcggaaccagcccatggcc
ctgagtttgtaccgacaattctgcaaacatcaggagctagagacactgaaggacctttac
aatcaggatgacaaccaccaggagctgggcagcttccacatccgagccagctatgctgca
gaggagcgtattgaggggcgagtcgcagctctgcagacagcagccgatgccttctacaag
gccaagaatgagtttgcagccaaggccacggaggatcaaatgcggctcctgcggctgcag
cggcgcctggaagatgagctggggggccacttcgtggacttgtctctgcacgacacagtc
accaccctcatcctgggcggccacagcaagcgtgcagagcagctggcacgtgacttccgc
attccggacaagaggctctggtggctgaagctgaccgccctggcagatctggaagattgg
gaggagctagaaaaattttctaagagcaagaaatcgcccattggctacctgccctttgtc
gagatctgcatgaagcagcacaacaagtatgaggccaagaagtatgcctcccgagtgggt
cccgagcagaaggtcaaggccttgcttctcgttggggatgtggctcaggctgcagatgtg
gccattgagcaccggaacgaagcagagctgagcctcgtattgtcccactgcactggagcc
acagatggggctacagccgacaaaattcagcgggctagggcacaagcccagaagaagtga
DBGET
integrated database retrieval system
