Canis lupus familiaris (dog): 403826
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Entry
403826 CDS
T01007
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain precursor
KO
K19719
collagen type II alpha
Organism
cfa
Canis lupus familiaris (dog)
Pathway
cfa04151
PI3K-Akt signaling pathway
cfa04510
Focal adhesion
cfa04512
ECM-receptor interaction
cfa04974
Protein digestion and absorption
cfa05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
403826 (COL2A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
403826 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
403826 (COL2A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
403826 (COL2A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
403826 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cfa00536
]
403826 (COL2A1)
Glycosaminoglycan binding proteins [BR:
cfa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
403826 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
403826
NCBI-ProteinID:
NP_001006952
Ensembl:
ENSCAFG00000009059
VGNC:
39471
UniProt:
A0A8C0PFU8
O77753
LinkDB
All DBs
Position
27:complement(39518936..39549645)
Genome browser
AA seq
1487 aa
AA seq
DB search
MIRLGAPQTLVLLTLLVAAVLRCHGQDVQKAGSCVQDGQRYNDKDVWKPEPCRICVCDTG
TVLCDDIICEDMKDCLSPETPFGECCPICSTDLATASGQPGPKGQKGEPGDIKDIVGPKG
PPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA
AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMG
PRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG
EAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVG
PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQG
APGPAGEEGKRGARGEPGGAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG
PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG
PSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRG
LPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG
KDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPPG
ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG
AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAGPPGEKGEPG
DDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG
PVGPPGLTGPSGEPGREGSPGADGPPGRDGAAGVKGDRGETGPVGAPGAPGSPGSPGPAG
PTGKQGDRGEAGAQGPMGPAGPAGARGIPGPQGPRGDKGEAGEAGERGLKGHRGFTGLQG
LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG
PPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADQAAGDLRQHDAEVDATLK
SLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETG
ETCVYPNPASVPKKNWWSSKSKDKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRL
LSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTVLKDGCTK
HTGKWGKTMIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcctcggggctccccagacgctggtgctgctgacgctgctcgtcgccgctgtc
cttcggtgtcacggccaggatgtccagaaggctggcagctgtgtgcaggacgggcagagg
tataatgataaggatgtgtggaagcccgagccctgccgaatctgtgtctgtgacactggg
actgtcctctgcgacgacataatctgtgaagacatgaaagactgcctcagccccgagacc
cccttcggagagtgctgtcccatctgctcaactgacctcgccactgccagtgggcaacca
ggaccaaagggacagaaaggagaacccggagacatcaaggatatcgtaggacccaaagga
cctcctgggcctcagggacctgcaggtgaacaaggacccagaggtgatcgtggtgacaaa
ggtgaaaaaggcgcccctggacctcgtggcagagatggagagcctgggacccctggaaat
cctggcccccctggtcctcctggcccccctggcccccctggccttggtggaaactttgct
gcccagatggctggaggatttgatgagaaggctggtggcgcccagatgggggtgatgcaa
gggccaatgggccccatgggacctcgaggacctccaggccctgctggtgctcccggacct
caaggatttcaaggcaaccctggggaacctggggaacccggcgtctctggtcccatgggt
ccccgtggtcctcctggcccccctggaaaacctggtgatgatggcgaagctggaaagcct
gggaaatctggtgaaagaggccctcctggccctcagggtgctcgcggcttcccgggaacc
ccaggccttcctggcgtcaagggtcacagaggctacccaggtctagatggtgctaaggga
gaagccggtgctccaggtgtgaagggagagagcggttcaccgggtgagaatggttctcca
ggcccaatgggtccccgcggcctgcccggagagagaggacggaccggtcctgctggtgct
gcgggcgcccgggggaacgatggccaaccaggccccgcgggccctccgggtcctgtaggt
cctgccggcggtcctggcttccctggtgctcccggcgccaagggggaagctggccccact
ggcgcccgaggtcccgaaggcgctcaaggtcctcgcggcgagcctggcactcctgggtcc
cccgggccggctggtgcctctggtaaccccggaactgacggaattcctggagctaaagga
tctgctggcgctcctggcatcgctggcgcccccggcttcccggggccccgtggtccacct
ggccctcaaggtgcgactggtcctctgggcccgaaaggtcagacgggcgaacctggaatt
gctggcttcaaaggcgaacaaggccccaagggcgagcccggccctgctggcccccaagga
gcccccggtcctgctggtgaagaaggcaaacgaggtgcccgtggagagcctggtggcgct
gggcccgttggtccccccggagaaaggggggctcctggcaaccgcggtttcccaggtcag
gatggtctggcaggtccaaagggagcccccggagagcgtgggcccagcggccttgctggt
cccaagggagctaatggggaccctggccgtcccggagagcctggccttcctggagcccgg
ggtctcactggtcgccctggcgatgctggtcctcaaggcaaagtcggtccttctggagcc
cctggtgaagatggtcgccccggacctccaggtcctcagggcgctcgtgggcagcctggt
gtcatgggtttccctggtcccaaaggtgccaacggcgagcctggcaaggctggtgagaag
ggacttcccggtgctcctggtctgagaggtcttccaggcaaagatggtgagactggtgct
gcaggaccccccggacctgctggacctgccggtgaacgaggcgagcagggtgctcctggg
ccatctgggttccagggacttcctggccctccgggtcccccaggcgaaggtggaaaacca
ggtgaccagggtgtccctggtgaagcgggagcccccggcctcgtgggtcccaggggtgaa
cgaggcttcccaggcgaacgtggctctcccggcgcccagggcctccaggggccccgtggc
ctccccggcactcctggcacagacggtcccaaaggcgcatctggcccggctggcccccct
ggggctcagggccctccaggtctgcaggggatgcccggtgagaggggcgcggctggcatc
gccgggcccaaaggagacaggggagacgttggtgagaaaggccccgagggagcccctgga
aaggacggaggacgaggcctgactggtcccattggcccccctggccccgctggcgccaat
ggtgagaagggagaagttggacctcctggtcctgcaggaaccgctggtgctcgtggcgcc
ccgggtgaacgtggagagactggaccccctgggcccgctggattcgcaggtcctcccggt
gctgatggccagccgggtgccaaaggcgagcaaggagaggccggccagaaaggcgatgct
ggtgccccaggtcctcagggcccctctggagctcctgggcctcagggtcctactggtgtg
actggtcctaaaggagcccgaggtgctcaaggccccccgggagccaccggattccctgga
gctgctggccgcgtcggacccccaggctccaatggaaaccctggaccccctggtccccct
ggtccttctggaaaagatggtcccaaaggcgctcgaggagacagcggcccccctggccgc
gctggtgaccctggtctccaaggtcctgctggaccccctggcgagaagggagagcctgga
gatgatggtccctctggtcccgatggtcctccaggtccccagggtctggccggtcagagg
ggcatcgttggtctacctgggcagcgtggtgagagaggattccctggcttgcccggccca
tcgggtgagcccggcaagcagggagctcctggtgcatctggagaccgaggccccccaggc
cccgtgggtcctcctggtctgactggtccttctggtgaacctggacgagagggcagcccc
ggtgctgatggtcctcctggcagagatggcgcagctggagtcaagggtgatcgtggtgag
actggtcccgtgggtgctcctggagcccctgggtcccctggctctcctggccccgctggc
ccaactggaaagcagggagaccgaggagaagctggtgcacaaggtcccatgggtcctgca
ggaccggctggagcccggggaatcccaggccctcaaggtccccgaggtgacaaaggagaa
gctggagaggctggcgagaggggactgaagggacaccgtggcttcactggtctgcaggga
ctgcccggccctcctggtccttctggagatcaaggtgcttctggccctgctggtccttct
ggccctagaggtcctcctggtcccgtcggtccctctggcaaagatggtgctaacggaatc
cctggccccatcggacctcctggtccccgtggacgttcaggcgaaactggccctgctggt
cctcccggaaaccccggaccccctggccctccaggtccccctggccctggcatcgacatg
tctgcctttgctggcctgggccagagagagaagggccccgaccccctgcagtacatgcgg
gctgaccaggcggccggcgacctgagacagcatgatgccgaggtggacgccacgctcaag
tccctcaacaaccagattgagagcatccgcagccccgagggctcccgcaagaaccccgct
cgtacctgccgggacctgaaactctgccaccctgaatggaagagcggagactactggatt
gaccccaaccagggctgcaccttggatgccatgaaggttttctgcaacatggagactggc
gagacgtgcgtctaccccaacccagcgagcgttcccaagaagaactggtggagcagcaag
agcaaggacaagaaacatatctggtttggagaaaccatcaatggtggcttccacttcagc
tacggtgatgacaacctggctcccaacactgccaacgtccagatgaccttcctccgcctg
ctgtccaccgagggctctcagaatatcacctaccactgcaagaacagcattgcctacctg
gacgaagcagccggcaacctcaagaaggccctgctcatccagggctccaatgatgtggag
atccgggctgagggcaacagcaggttcacatatactgttctgaaggatggctgcacgaaa
cacaccggtaagtggggcaagactatgatcgagtaccggtcacagaagacctcgcgcctc
cccatcattgacattgcgcccatggacataggagggcccgagcaggaatttggtgtggac
atcgggcctgtctgcttcttgtaa
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integrated database retrieval system
