Canis lupus familiaris (dog): 474641
Help
Entry
474641 CDS
T01007
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
cfa
Canis lupus familiaris (dog)
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cfa03041
]
474641 (YTHDC2)
Enzymes [BR:
cfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
474641 (YTHDC2)
Spliceosome [BR:
cfa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
474641 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
Helicase_C
R3H
DEAD
HA2_N
Ank_2
AAA_19
nSTAND3
AAA_22
Ank
ATPase
PhoH
AAA_16
AAA_7
UvrD-helicase
AAA_29
T2SSE
ABC_tran
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
474641
NCBI-ProteinID:
XP_038513661
Ensembl:
ENSCAFG00000000224
VGNC:
48504
UniProt:
A0A8C0SAP7
A0A8I3RXY7
LinkDB
All DBs
Position
11:3680238..3758386
Genome browser
AA seq
1429 aa
AA seq
DB search
MSRPSSVSPRPPAPGGGGGGPAPCGPGGGGRAKGLKDIRIDEEVKIAVNIALERFRYGDQ
REMEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYLTVKKKDGSETAHAMMTCNLTH
NTKHAVRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQIPVKR
GESEFDSFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCFKNGIPC
RIFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLM
AGDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDVNLFIRYFG
SCPVIYIQGRPFEVKEMFLEDILRTTGYTNKEMLKYKKEKQREEKQQSTLTEWYSAQENT
FKPESQRQRTVPNVTEEYDLLDDGGDAVFSQLTEKDVNCLEPWLIKEMDACLSDIWLHKD
VDAFAQVFHLILTENVSVDYRHSETSATALMVAAGRGFSSQVEQLISMGANVHSKASNGW
MALDWAKHFGQTEIVDLLESYSASLEFGNLDESSLVHTNGSDLSAEDRELLKAYHHSFDD
EKVDLDLIMHLLYNICHGCDAGAILIFLPGYDEIVGLRDRILFDDKRFADNTHRYQVFML
HSNMQTSDQKKVLKNPPAGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNFVT
MLKMVWISKASAVQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQELCLHTK
LLAPVNCPIADFLMKAPEPPPALIVRNAVQMLKTIDAMDAWEDLTELGYHLADLPVEPHL
GKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFSDHMALL
RAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDV
NTNSENWAVVKAALVAGMYPNLVHVDRENVVLTGPKEKKVRFHPTSVLSQPQYKKIPPAN
GQAAAIQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTILVFCGPARLASNALQEPSSFR
VDGIPNDSSDSEMEDRTTANLAALKLDEWLNFKLDPEAASLLLQLRQKWHSLFLRRMRAP
SKPWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSWRSNNSRKT
SADTEFSDESATAERVLMKSPSPALHPPQKYKDRGILHPKRSTDDRSDQSSVKSTDSSSY
PSPCASPSPPSSGKGSKSPSPRPNMPIRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLN
RAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGLGGVFKVEWVRKESLPF
QFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLPLGDKTTAD
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggccgagcagcgtctccccgcggccgccggctcctggtggcggcgggggcggc
ccagctccgtgcggcccggggggcgggggccgggctaaggggctgaaggacattcgtata
gacgaggaggtgaagatcgcggtcaatatcgctctggagcgcttccggtacggggaccag
agagaaatggaatttccttcttctttgaccagcactgaaagagcctttattcatcgattg
agtcagtctcttggtttggtctctaaaagcaaaggaaagggagcaaatagatacctaact
gtgaagaagaaagatggatcagaaacagctcatgcaatgatgacctgtaatttgactcat
aatacaaaacatgctgttaggagcctaattcaaagatttcctgtcaccaataaagagcgt
actgaacttctgcctaaaacagaaagaggaaatgtgtttgcagttgaagctgaaaaccga
gaaatgagcaaaacaagtgggcgactcaacaatggcatacctcagattccagtgaaaaga
ggagaatctgaatttgattctttcaggcagtctctccctgtgtttgagaaacaagaagaa
attgttaaaataattaaagaaaataaagtagttttgattgtaggagagactgggtctgga
aagactacacagattcctcagttccttttagatgattgctttaaaaatggtatcccctgc
cgtatattttgtacccagccaagacggttagcggcaattgccgtggctgaaagagttgct
gcagagagaagggaaagaattggtcaaacaattggatatcagatccgattagaaagcagg
gtttctccaaagacacttctgacattttgcactaacggggttttacttcgtacattgatg
gcaggagatagtacattgtctactgtgacacatgttattgtggatgaagtacatgaaagg
gatcgatttagtgactttttacttacaaagttgagagatctgttgcaaaagcacccaact
ttgaaacttattctttctagtgctgccttggatgtgaatctttttataagatattttgga
agttgtccagtgatatatatacagggaagaccatttgaagtaaaagaaatgtttctggaa
gacatcttaagaactactgggtacacaaacaaagaaatgttaaaatacaaaaaggaaaaa
caacgagaagagaaacaacaaagcacccttacggaatggtattcagctcaagagaatact
ttcaagcctgaatctcagaggcagagaactgttccaaatgtgactgaagagtatgattta
ttggatgatggcggtgatgctgtcttcagtcagttgacagaaaaagatgtgaattgtctt
gagccatggttaataaaggaaatggatgcttgtctctctgacatatggctgcataaagat
gttgatgcctttgctcaggtctttcatcttattttaactgaaaatgttagtgttgattac
aggcatagtgaaaccagtgcaacagctctgatggttgctgcaggacgaggtttttcaagt
caagtagagcagttaattagtatgggagccaacgttcatagtaaagcatcaaatggctgg
atggctttagattgggctaaacactttggacagactgaaattgtggatcttctagaatct
tacagtgcttcactggaatttggaaatctagatgaaagttctctggttcacacaaacgga
agtgacctcagtgcagaagacagagagctcctgaaagcttatcatcatagttttgatgat
gaaaaagtagacttggatttgatcatgcaccttctatacaatatctgccatggttgcgat
gctggtgcaatattaattttcctacctggatatgatgaaattgttggattgagggatcgc
atcctgtttgatgataaacgatttgctgacaacacacatagataccaagtctttatgctt
cattcaaatatgcaaacatctgatcaaaagaaagtattaaaaaacccacctgccggtgtt
cgaaaaataatcctttccaccaatattgctgaaaccagcatcacagtcaatgatgttgtc
tttgttattgattctggtaaagtgaaagagaaatcctttgatgcactgaattttgttaca
atgttaaaaatggtgtggatttccaaagctagtgctgtacaacgaaaaggcagggcaggg
agatgcagacctggaatttgttttcggctgttcagtagactccgattccagaatatgttg
gaatttcagactccagaacttttgagaatgccattgcaggaactttgtttacatactaag
ctgttagccccagtgaattgtcctattgctgacttcctaatgaaagctcctgaaccccca
ccagctttaattgtaagaaatgctgtacaaatgcttaagacaatagatgcaatggatgca
tgggaagatctcactgagctggggtatcatttggctgacttgcccgtagaaccacatctt
ggtaaaatggtcctgtgcgctgttgttttaaagtgtctggaccccatcctcacaattgcc
tgcacgttagcctatcgagatccttttgtcctgccaacccaggcctctcaaaaacgggca
gctatgctgtgtaggaaacgcttcactgcaggaactttcagtgaccacatggcacttctc
agagcattccaggcatggcagaaagcacgaagtgatgggtgggagcgagccttttgtgaa
aagaattttctttcacaagccaccatggaaataatcattggcatgagaactcagttgctt
ggtcaacttagagcatcaggttttgttagagctcgaggtggtggtgacattcgagatgtt
aacacaaattctgagaattgggctgttgttaaagctgcattggtggcaggcatgtatcct
aatttagtccatgtggacagagagaatgtagtgttgacagggccaaaggagaaaaaagtt
cggtttcatcccacttcggttctcagtcagcctcagtataaaaagattcctccagccaat
ggtcaggctgcagcaattcaggcactgcctacagattggcttatttatgatgaaatgacc
agagcccatagaatagctaatattagatgttgttcagcagtgacacctgttactatattg
gtattctgtggaccagctaggttggcaagtaatgctcttcaagaaccttcatcatttcga
gtggatggtattcctaatgacagtagtgatagtgaaatggaagatagaactactgctaat
ttggcagctttgaaacttgatgagtggctcaatttcaaactagaccctgaggcagccagt
ttattgctgcaactcagacagaagtggcacagcttatttttacgccgaatgagagctccg
tctaaaccttggtctcaagttgatgaagctaccataagagccattatagctgttctgagc
actgaagaacagtctgcaggtttacaacagccatctggaataggtcagaggccaaggcct
atgtcttcagaagaacttcccctggcatcttcttggaggtcaaataacagtaggaaaact
tcagcagatactgaattttctgatgagtctgctactgcagaaagagtgttgatgaaatct
ccatctccagcactgcacccacctcagaagtacaaagatagagggattttacatcctaaa
cgaagcactgatgaccgatcagatcaatcttctgtgaaatctacagacagcagtagctac
ccaagtccttgtgctagtccttctcctccatcctcaggaaagggctcaaaatctccttca
ccaagaccaaacatgcctattcgatacttcataatgaagagtagcaatttgagaaacctt
gaaatttctcaacagaagggtatctggtctacaacccctagtaatgagcggaagctaaat
cgagccttttgggaaagcagcatggtttacttggtattttctgttcaaggatctggacat
ttccagggattctctaggatgtcttctgagataggaagggagaagagccaggactggggc
tcagctggactgggaggagtatttaaagtggagtgggtccggaaggagagtcttcccttt
cagtttgcacatcacttgctcaatccttggaacgataacaagaaagtccagatcagcaga
gatgggcaggaactagaacctcaggttggtgaacagttgctccagttatgggaacgcctt
ccattgggagacaaaaccacagctgattga
DBGET
integrated database retrieval system
