KEGG   Canis lupus familiaris (dog): 474839
Entry
474839            CDS       T01007                                 
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
cfa  Canis lupus familiaris (dog)
Pathway
cfa03013  Nucleocytoplasmic transport
cfa03015  mRNA surveillance pathway
cfa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cfa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    474839 (DDX39B)
  09122 Translation
   03013 Nucleocytoplasmic transport
    474839 (DDX39B)
   03015 mRNA surveillance pathway
    474839 (DDX39B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cfa03019]
    474839 (DDX39B)
   03041 Spliceosome [BR:cfa03041]
    474839 (DDX39B)
Enzymes [BR:cfa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     474839 (DDX39B)
Messenger RNA biogenesis [BR:cfa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     474839 (DDX39B)
Spliceosome [BR:cfa03041]
 Complex C
  Other components
   EJC/TREX
    474839 (DDX39B)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    474839 (DDX39B)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 Cas3-like_C_2
Other DBs
NCBI-GeneID: 474839
NCBI-ProteinID: NP_001014399
Ensembl: ENSCAFG00000000509
VGNC: 39855
UniProt: Q5WR10
LinkDB
Position
12:complement(1169048..1179440)
AA seq 428 aa
MAENDVDNELLDYEEDEVETAAGGDGSEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq 1287 nt   +upstreamnt  +downstreamnt
atggcagaaaatgatgtggacaatgaactcttggactatgaagaagatgaagtagagaca
gcagctgggggagacgggtctgaggcccctgccaagaaggatgtcaagggttcctacgtc
tccatccacagctctggctttcgtgacttcctgctgaagccagagttgctccgggccatt
gttgactgtggctttgaacatccatcagaagtccagcatgagtgcatccctcaggccatt
ctgggaatggatgtcctatgccaggccaagtcagggatgggaaagacagcagtgtttgtg
ctggccacactacaacagttggagccagttactggacaggtgtctgtgctggtgatgtgt
cacacccgggagttggcatttcagatcagcaaggagtatgagcgcttctctaaatacatg
cccaatgtcaaggtcgcggtgttttttggtggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaattgcccgcatattgttgtggggacccctggccgcatcctcgccctggct
cgaaataagagcctcaatctcaaacacattaaacactttatcttggatgaatgtgataag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccgtcctgtctgccgc
aagttcatgcaagacccaatggagatcttcgtggatgatgagacgaagctgacgctgcat
gggttgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttctcgatgtccttgagttcaatcaggtggtgatctttgtgaagtctgtgcagcgttgc
attgccctcgcccagctgctggtagagcagaacttcccagccattgccatccaccgaggg
atgccccaggaggagaggctttctcggtatcagcagtttaaagattttcaacgacgaatt
cttgtggctaccaacctatttggccgaggcatggacattgagcgggtgaacattgccttc
aactatgacatgcctgaggattctgacacttacctgcatcgggtggcccgagcaggccgg
tttggcaccaagggcttggccatcacatttgtatcagatgaaaatgatgccaagatcctc
aatgatgtgcaggatcgctttgaagtcaatattagtgagctgccagatgagatagacatt
tcctcttacattgaacagacgcggtag

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