Canis lupus familiaris (dog): 475742
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Entry
475742 CDS
T01007
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase isoform X1
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
cfa
Canis lupus familiaris (dog)
Pathway
cfa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
475742 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cfa03041
]
475742 (SNRNP200)
Enzymes [BR:
cfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
475742 (SNRNP200)
Spliceosome [BR:
cfa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
475742 (SNRNP200)
Complex C
U5 SnRNP specific factors
475742 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Motif
Other DBs
NCBI-GeneID:
475742
NCBI-ProteinID:
XP_038309045
Ensembl:
ENSCAFG00000041093
UniProt:
A0A8C0RIK1
A0A8I3RT08
LinkDB
All DBs
Position
17:34243105..34275448
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AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFTQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKT
LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVI
VFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYL
HEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE
SVFDIMEMEDEERNALLQLSDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATG
AHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgtgaccgcccgtagcctgcagtacgagtacaaggcgaactcgaatcttgtc
ctccaagctgaccgctctctcattgaccggacccgccgggatgaacccacgggagaggtg
ctgtccctggttgggaagttggagggcacccggatgggagataaggctcaacggaccaaa
ccacagatgcaggaagaaagaagagccaagcgaagaaagcgtgatgaggaccgacatgac
attaataagatgaagggttatactctgctgtctgagggcatcgatgagatggtgggcatc
atctataagcccaagactaaagagacccgagagacctatgaggtgctgctcagcttcatc
caggctgcccttggggaccagccccgtgatattctttgtggggcagctgatgaagttcta
gctgtcctcaagaatgaaaaacttcgagacaaggaaagaagaaaggagattgacctgctg
ttgggtcagacagatgataccagataccatgtgctagtgaacttgggcaaaaagatcaca
gactatggcggagataaggaaatccagaatatggatgacaacattgatgagacatacggt
gtgaatgttcagtttgagtctgatgaggaggaaggtgatgaagatgtctatggggaagtt
cgagaagaggcatctgatgatgacatggaaggggatgaggctgttgtgcgctgcactctt
tcggctaatcttgtggcctcaggggaactgatgagttccaagaagaaggatttgcaccct
cgggatattgatgcattttggctacagcggcagctcagtcgattctatgatgatgccatt
gtgtcacagaagaaggcagatgaagtgttggagattctgaagacagccagtgatgatcgg
gaatgtgaaaaccagctggttctgctccttggtttcaacactttcgattttattaaagtg
ttgcgacagcacaggatgatgattttatattgcaccttactggccagtgcacagagtgag
gcagaaaaggaaaggatcatgggaaagatggaagctgatccagagctctccaagttcctc
taccagctccatgagactgagaaggaggatctgatccgggaggaaaggtcccggagagag
cgagtgcgtcagtcccggatggacacagacttggaaaccatggatctggaccagggtgga
gaggcactggctccacggcaggttctggacttggaggacctggtttttacccaggggagc
cacttcatggccaataaacgttgtcagcttcctgatgggtccttccggcgccagcgcaag
ggctatgaagaggtgcatgtgcccgctctgaagcccaagccctttggttccgaagaacaa
ctgcttccagtggagaagctcccgaagtatgcccaggctggatttgagggcttcaaaaca
ttaaatcggatccagagtaaactctaccgtgctgctctggagacagatgagaatctgctg
ctgtgcgcccctactggtgcaggtaagaccaacgtggccctgatgtgcatgctccgagag
atagggaagcacattaacatggatggcaccatcaacgtggatgacttcaagattatctac
attgctcccatgcggtctctagtgcaggagatggtgggcagttttggaaagcgcctggcc
acctatggcatcactgttgcagaattgactggtgaccaccagctgtgcaaggaggagatc
agcgccactcagatcatcgtttgcacccccgagaagtgggacatcattacccgcaagggt
ggggagcgcacatacacccagcttgtacggcttatcattctggatgagatccatctcctc
cacgatgacagaggtcctgtcttagaagctttggtggccagggccatccgaaacattgag
atgactcaggaggatgtccgactcattggtctaagtgctaccctccccaactatgaagac
gtggctaccttcctgcgtgtggatcctgccaagggcctcttttacttcgacaatagcttc
cgcccagtgcccctggaacagacttatgtgggtatcacagagaaaaaagctatcaagcgt
ttccagatcatgaatgaaatagtctatgagaagattatggaacatgctggaaaaaatcag
gtgctggtttttgtccactcccggaaggagactgggaagacggccagggccatccgtgac
atgtgcctggagaaggacactctgggtctgttcctgagagagggctcagcctccacagaa
gttcttcggacagaagctgagcagtgcaagaacctggagctgaaggatcttctgccgtat
ggctttgctattcatcatgcaggcatgaccagagttgaccggacacttgtagaggatctt
tttgctgataaacacattcaggttttagtttccacagcaacactggcttggggtgtgaat
ctccctgcccatacagtcatcatcaaaggcacccaggtgtacagtccagagaaggggcgc
tggacagagctaggggcgctggacattctgcagatgctgggacgtgctggaagaccccag
tatgacaccaaaggtgaaggcatactcatcacatctcatggggagctacagtactacctg
tccctcctcaatcagcaacttcctattgagagccagatggtttcaaagttgcctgacatg
cttaatgcagaaatcgtgctggggaacgtccagaatgccaaggatgcagtgaactggctc
ggctatgcctacttgtatatcagaatgctccgatccccaaccctttatggcatctctcac
gatgacctcaagggggatcccctcttggaccaacgccgattggatctggttcatactgct
gccttgatgctggataagaacaatctggtcaagtatgacaagaagacaggcaacttccag
gtgacagaactgggccgcatagccagccactactatattaccaatgacacagtacagacc
tacaaccagctgctgaagcccactctgagtgaaattgagcttttcagagtcttctccttg
tcctcagagttcaagaacatcactgtgagagaggaggagaagctggagctgcaaaaattg
ctggagagggtgcccattcctgtgaaggagagcattgaggaacccagtgcaaagatcaat
gtgttgctccaggccttcatctcgcagctgaaattggagggctttgcgctgatggcggac
atggtgtatgttacacagtcggctggccggttgatgcgtgctatctttgaaattgtcctg
aaccgaggttgggcacagctgacagataagacgctgaacctctgcaagatgattgacaaa
cgcatgtggcagtccatgtgtcctctgcgccagttccggaaactccctgaggaagtggtg
aagaagattgagaagaaaaacttcccctttgagcgtctatatgacttgaatcataatgaa
ataggggagcttatccgcatgccgaagatgggaaagactatccacaaatacgtccacctc
ttccccaagttggagttgtcggtgcatctacagccaatcacacgctccaccctgaaagtg
gagctgaccatcacgccagacttccagtgggatgaaaaggttcatgggtcatcagaagca
ttctggattctggtggaggatgtggatagtgaggtgatactccaccatgagtattttcta
ctcaaggccaagtatgcccaggatgagcatctcatcacgttcttcgtgcctgtttttgaa
ccactgcctcctcagtacttcatccgagtggtgtctgaccgctggctctcttgtgagacc
cagctgccggtctccttccggcacctgatcctaccagagaagtacccacctccaactgag
cttctggacctgcagcccttgcccgtgtctgccctgagaaacagtgcctttgagagcctt
taccaggataagtttcctttcttcaaccccatccagacccaagtgttcaacaccgtctac
aacagtgatgacaacgtgtttgtgggggcgcccacgggcagcggaaagaccatctgcgca
gagtttgccatcctgcggatgctgctgcagaactcggagggacgctgtgtctatatcacc
cccatggaggcgctggcagagcaggtttacatggactggtacgagaagttccaggacagg
ctcaacaagaaggtggtgctcctgacgggggagactagcacagacctgaagcttctgggc
aagggcaatatcatcatcagcacccctgagaagtgggacatcctctcccggcggtggaag
cagcgcaagaatgtccagaacatcaacctcttcgtggtggatgaagtccaccttatcggg
ggcgagaatgggcctgtcttagaagtgatctgctcccggatgcgctacatctcctcccag
attgagcgacccattcgcatcgtggcccttagctcctcgctctcgaatgctaaggatgtg
gcccactggctggggtgcagtgccacctctaccttcaacttccacccgaatgtgcgtccc
gtgcccttggagctgcatatccagggcttcaacattagccacacacagactcgcctgctc
tccatggccaagcccgtgtaccatgctatcaccaaacattctcccaagaagcctgtcatt
gtttttgttccgtcccgaaagcagacccgcctcactgcgattgacatcctcaccacgtgt
gcagctgacatccagcggcagaggttcttgcactgcaccgagaaggatctaatcccgtac
ctggagaaactaagtgacagcactctcaaggaaacgctgttaaatggggtgggctacctg
cacgagggcctcagccccatggagcgacgcctggtggaacagctcttcagctcaggggct
atccaggtggtggtagcttctcgaagtctctgctggggcatgaatgtggccgcccacctg
gtgatcatcatggacacccagtactacaatggcaagatccatgcgtacgtggattacccc
atctacgatgtgcttcagatggtgggccatgccaaccgcccactgcaggatgacgagggg
cgctgtgtcatcatgtgccagggctctaaaaaggatttcttcaagaagtttttatatgaa
cctttgccagtagagtcccacctcgaccactgtatgcatgaccacttcaatgctgagatt
gttaccaagaccatagagaacaagcaggatgccgtggactacctgacctggacctttctg
taccgccgcatgacacagaaccccaattactacaacctgcagggcatctcccatcgtcac
ctgtctgaccacttgtcagaactcgtggagcagaccctgagtgacttggagcagtccaag
tgcatcagcattgaagacgagatggatgtggcacccctgaacctgggcatgattgctgct
tactattacatcaactacaccaccattgagctcttcagcatgtccctgaatgccaagacc
aaggtgcgagggcttatcgagatcatctccaatgcggcagagtatgagaacattcccatc
cggcaccatgaagataacctcctgcgacagttggctcagaaggtcccccacaagctgaat
aaccctaagttcaatgacccacacgtcaagaccaacctgcttctgcaagctcacctgtcc
cgcatgcagctgagtgctgagctgcagtcagatacagaggaaattcttagcaaggcaatc
aggctcattcaggcctgcgtggatgtcctctccagcaatgggtggcttagccctgctttg
gcagctatggaactggcccagatggtaacccaagccatgtggtccaaggactcctacctg
aaacagctgccacacttcacttcagagcatattaaacgttgcacagacaagggagtggag
agtgtttttgacatcatggagatggaagatgaagagcgaaatgcattgcttcagctgtct
gacagccagatcgctgatgtggcccgcttctgcaaccgctaccctaatattgagctttct
tacgaagtggtggataaggacagcatccgcagtggtgggccggttgtggtgctggtacag
ctggagcgggaagaggaggtcacaggccctgtgatcgcacctctctttccacagaaacgt
gaagagggctggtgggtagtgattggtgatgccaagtccaatagcctcatctcgatcaag
aggctgaccctgcagcagaaggccaaggtgaagcttgactttgtagccccagccactggt
gcccacaactacactctgtatttcatgagtgatgcttacatgggctgtgaccaggaatac
aaattcagcgtggatgtgaaggaagcagagacagacagtgactcagactga
DBGET
integrated database retrieval system
