Canis lupus familiaris (dog): 476664
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Entry
476664 CDS
T01007
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cfa
Canis lupus familiaris (dog)
Pathway
cfa03013
Nucleocytoplasmic transport
cfa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
476664 (UPF1)
03015 mRNA surveillance pathway
476664 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfa03019
]
476664 (UPF1)
Enzymes [BR:
cfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
476664 (UPF1)
5.6.2.5 RNA 5'-3' helicase
476664 (UPF1)
Messenger RNA biogenesis [BR:
cfa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
476664 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
476664 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
476664
NCBI-ProteinID:
XP_005632737
Ensembl:
ENSCAFG00000014578
VGNC:
48150
UniProt:
A0A8C0RKR0
LinkDB
All DBs
Position
20:complement(44149222..44185842)
Genome browser
AA seq
1130 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAG
GPVGAGAGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLP
VHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGET
VLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFL
SWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDA
YQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVI
IWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagttctcagacgctcaccttcctggacaccgaggaa
gccgagctgctcggcgccgacacacagggctcggagttcgagttcaccgacttcaccctc
cccagtcagacgcagacgcccccgggtggccccggcggccccggaggaggtggcgcgggc
ggcccggtcggcgctggcgcgggcgctgcggccggacagctggacgcgcaggtcggtgga
ccagagggcattctgcagaatggggccgtggatgacagcgtggccaagaccagccagttg
ttggctgagttgaactttgaagaagatgaagaagatacctattacacaaaggatctccct
gtacatgcctgcagttactgcggaatacacgatcctgcttgcgtggtttactgtaacacc
agcaagaagtggttctgtaacgggcgtggaaatacttctggcagccacattgtaaatcac
ctcgtgagggcaaaatgcaaagaggtgactctgcacaaggatgggcccctgggggagaca
gtcctggaatgttacaactgtggctgccgcaatgtcttcctccttggcttcatccctgcc
aaggctgactcagtagtggtgctgctgtgcaggcagccctgcgccagtcagagcagcctg
aaggacatcaactgggatagctcccagtggcagcccctcatccaggaccgctgcttcctc
tcttggctggtcaagatcccttctgagcaggagcagctgcgggctcggcagatcaccgcc
cagcagatcaacaagctggaggagctctggaaggaaaatccttctgccactttggaggac
ctggagaagccaggcgtggacgaggagccgcagcatgtcctcctgcggtacgaggatgcc
taccagtaccagaacatattcggccctctggtcaagctggaggccgactacgataagaaa
ctgaaagagtcccagactcaagataacatcacggtcaggtgggacctgggccttaacaag
aagagaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcata
atttggttaagagacatgcggctcatgcagggggatgagatatgcctgaggtacaaaggg
gatctggcacccctctggaaagggatcggccacgtcatcaaggtccctgataattatggc
gatgagatcgccattgagcttcggagcagtgtgggtgcacctgtggaggtgactcataac
ttccaggtggatttcgtatggaagtcaacctcctttgataggatgcagagtgcgttgaaa
acgttcgccgtggatgagacctctgtgtcgggctacatctaccacaaactgctcgggcat
gaggtggaggatgtgatcattaagtgccagctgccaaaacgctttacggcacaggggctc
cccgacctcaaccattctcaggtttatgctgtgaagactgtgctgcaaagaccgctgagc
ctgatccagggaccaccaggcacagggaagacagtgacctctgccaccatcgtctatcac
cttgctcggcagggcaatgggcctgtgctcgtctgtgctccgagtaacatagctgtggat
cagctgactgagaagatccaccagactgggctgaaagttgtacggctttgtgccaagagc
cgtgaggccatcgactccccagtgtcattcttggccctgcacaaccagatcaggaacatg
gacagcatgccagagctacagaagctgcagcagctgaaggatgagacgggggagctgtca
tctgctgatgagaagcggtaccgggctctgaagcgtaccgctgagagggagctgctcatg
aatgcagatgtcatctgctgcacatgtgtgggtgcaggggacccaaggcttgccaagatg
cagttccgctccattttaattgacgagagcacccaggccactgagccagaatgcatggtc
cctgtggtccttggtgccaagcagctcatcctcgtgggtgaccactgccagctgggccct
gtggtgatgtgcaagaaagcagccaaggctggactatctcagtcgctctttgagcgcctg
gtggtgctgggcatccgtcccatccgcctccaggtccagtatcggatgcaccctgcgctc
agtgccttcccatccaacatattctacgagggctctcttcagaatggcgtcactgcagct
gatcgagtgaagaagggatttgacttccagtggccccaacctgataagccgatgttcttc
tacgtgacccagggccaagaggagattgctagctcaggcacctcctacctgaacaggacg
gaagctgcaaatgtggagaagatcaccacgaagctgctaaaggcgggtgccaagcctgac
cagattggcatcatcacaccttacgagggccagcgctcctacctggtgcagtacatgcag
ttcagcggctctctgcacaccaagctctaccaggaggtagagattgccagcgtggacgca
ttccaggggcgagagaaggacttcatcattctttcctgcgtgcgagccaacgagcaccaa
ggcattggatttttaaacgaccccaggcggcttaatgtggccctgaccagagcaaggtat
ggggttattattgtgggcaacccaaaggccctgtccaagcagcccctctggaaccacctg
ctgaactattacaaggagcaaaaggtgctggtggaggggcccctgaacaacctgcgggag
agccttatgcagtttagcaagcccaggaagctggtcaataccatcaacccgggagcccgc
ttcatgacgacagccatgtatgatgcccgggaggctattatcccagggtcagtctatgat
cggagcagccagggccggccctcaaacatgtacttccagacccacgaccagatcggcatg
attagtgcaggccccagccacgtggctgccatgaacattcccatccccttcaacctggtc
atgccccccatgccaccaccaggatattttggacaagcaaatgggccagccgcaggccgg
ggtaccccaaaaggcaagactggtcgtggggggcgccagaagaaccgctttgggctccct
ggacccagccagacgaatctccccaacagccaggccagccaggatgtggcatcgcagccc
ttctcccagggcgccctgacacagggctacatctccatgagccagccctcccagatgagc
cagcctggcctctcccagcccgagttgtcccaggacagttaccttggcgatgagtttaag
tcacagattgatgtggcactgtcgcaagactccacgtaccaaggggagcgggcataccag
cacggcggagtgacagggctgtcccagtactag
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