Canis lupus familiaris (dog): 476786
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Entry
476786 CDS
T01007
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cfa
Canis lupus familiaris (dog)
Pathway
cfa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
476786 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfa03021
]
476786 (PCF11)
03019 Messenger RNA biogenesis [BR:
cfa03019
]
476786 (PCF11)
Transcription machinery [BR:
cfa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
476786 (PCF11)
Messenger RNA biogenesis [BR:
cfa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
476786 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
476786
NCBI-ProteinID:
XP_038312151
Ensembl:
ENSCAFG00000004609
VGNC:
44299
UniProt:
A0A8C0S7C0
LinkDB
All DBs
Position
21:complement(15881943..15906444)
Genome browser
AA seq
1686 aa
AA seq
DB search
MSEQTPAEAGTAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPTTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGPGSAPSKLHVPQIPPMAVKPPHQVPVQPEKSRPGPSLQIQDLKGTNRDPRLN
RMSQHSSHGKDQSHRKEFLMNTLNQSDIKTSKTVPSEKLNSSKQEKSKSGEKITKKELDQ
FDSKSKSKSKSPSPLKNKLSHTKDLKNQESESTRVSDMSKRDPRLKKHLQDKTDSKDDDV
KEKRKAAEKKDKDEHMKSSEHRLVGSRNKIINGIVQKQDTITEESEKQGTKPGRSSTRKR
SRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKAGKIRQSGVKQSHMEEFTLPSR
EERNAKRSNKQDIRDPRRIKKTEEERPQEAANQHSTKSGTEPKENIENWQSSKSTKRWKS
GWEENKSLQQGDEHSKSPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKELTLAS
KRELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCNVRDSPTEENKGGLKKKP
LLSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASR
NSGAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFND
RFPLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVTRDGPTKMI
FEGPNKLSPRIDGPPTPGSLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVG
TPLRFEGPIGQAGGGGFRFEGSPGLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGL
RFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPAGGIRFEGPLLQ
QGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFE
GPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQP
GPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQSTRFDNHPSQRLESVSFN
QTGPYNDPPGNAFNAPSQGLQFQRHEQMFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYF
DEKNLQSSQFGNFGNLPAPITVGNIQASQQVLSGVAQPVAFGQGQQFLPVHPQNPGAFVQ
NPSGALPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVSEVAAQPPPEEEEDQ
NEDQDVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQN
RTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEF
QSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFD
CTPSPSKTPVENPLNIMLNIVKNELQEPCESPKVKEERIDTPPACTEESIATPTEIKTEN
DTVESV
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggtactgcgggggcccgggaggacgcctgtcgg
gattatcaatcatcactcgaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaacgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgttcc
acatgggatgaaatattccctttgaagaaactttatgccctggatgtcagagtcaattcg
ttagatcctgcttggcctattaagcctctgccccccaatgtgaatacatctagcatccat
gtgaatcctaagtttttaaataaatcgcctgaagagcctacaacacctggcacagtggtc
agttcccctagcatctctacgcctccaattgttcctgatatacaaaagaatcttacccaa
gaacaactaataaggcaacagttactggcaaaacaaaaacagttattagaacttcagcag
aagaagctggagcttgagctagagcaagctaaggcacaactggcagtttctcttagtgtt
cagcaggagacatctaacttaggtcctggatctgcaccatccaaattacatgttccacag
attccccctatggcagttaaacctccacaccaggttcctgtgcaacctgagaaaagccgt
ccaggtccatcgttacaaattcaggatttgaaaggaactaaccgggatccccgtcttaat
aggatgagtcaacattcttcgcatggaaaagatcagagtcataggaaagaattcctaatg
aacacattgaaccaatctgatattaagacaagtaaaactgtaccctctgaaaaactaaat
tcatccaagcaagagaaaagtaaatcaggtgaaaaaataacaaaaaaagaacttgaccaa
ttcgattctaaatctaaatctaaatctaaatcaccatcacctttgaaaaacaaattatcc
cacacaaaagacttgaaaaatcaagaatctgaaagtacaagggtgtctgatatgagcaag
agagatccaaggttaaaaaaacatcttcaggataagactgatagcaaagatgatgatgta
aaagagaagagaaaagccgcagaaaaaaaggataaagatgaacacatgaagtcatctgaa
cacagactggttggaagtagaaataaaatcatcaatggcattgtacaaaagcaggataca
ataacagaagagtcagaaaaacaagggacaaaaccagggagatcaagtactagaaagcga
tcaagatcgagatcacccaagtctcggtcaccaattatacattctccgaagagaagagac
cggcggtcacccaaacgaaggcaaaggagtatgtctccaacttcgacacccaaagctgga
aagatccggcaatcaggagttaagcagtcacatatggaagagtttacactaccttccagg
gaagagcgaaatgctaagagaagtaataaacaagatattcgagatccaaggcgaataaaa
aagacggaagaggaacgaccacaagaagctgcaaaccagcattctacaaagtccggcact
gaaccaaaggagaatatagagaattggcaaagttccaagtctaccaaaagatggaaatct
ggttgggaagaaaataaaagcttacaacagggtgatgaacatagtaaatctcctcatcta
aggcatagggagagctggtcaagcactaaaggaatcttgtcacctcgagccccaaagcag
cagcatcgattaagtgtagatgccaatcttcagattcctaaagagttaactcttgcaagc
aaaagagaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggat
gagttccttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtaaacat
agatgcaatgtacgggatagtcctacagaagaaaataaaggtggattaaaaaagaaacct
ctcttatctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacag
gttcagcattcatttccaagacttgatctcttagatcctgatatttttgactaccctttg
actgatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtagg
aatagtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttct
cctatatctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaaga
catgacgagcaagtctctgctaaaggtgtacgagaagaacagagatcaccattcaatgat
cgttttccacttaagcgacctagatatgaagattcagataaaccatttgtagatagccca
gcatcaagatttgccggccttgatacaaatcagcgacttacagctttagctgaagataga
ccattatttgatggacctagtaggccatcagtaacaagagatggcccaaccaagatgatt
tttgaaggacctaataaattaagccctagaattgatggacctcctacaccaggttctctt
cggtttgatgggtcaccaggacaaatggggggtggtggccctttgagatttgaaggacca
caaggtcagctaggaggtgggtgtcctttgagatttgaaggtcctccaggacctgtgggg
acacctctgcggtttgaggggccgattggtcaagcaggaggaggtggttttcggttcgaa
ggttcccctggtctgaggtttgagggatctgcaggtggtttgcgatttgaaggaccaggg
ggccagcctgtgggtggtctcaggtttgagggacatcggggtcaacctgtgggtggtcta
aggtttgagggaccgcatggtcagccggtgggtggacttagatttgataatccccgaggt
cagcctgtaggcggacttaggtttgaaggaggtcatggtccatcaggggctgcaattagg
tttgatggacctcatggtcagccagcaggtgggatcagatttgaggggcctttgctacag
cagggagttggaatgaggtttgagggcccccatggtcagtcagtagctggtttgaggttt
gaaggacaacataatcaacttggtgggaaccttaggtttgagggtccacatggtcaaccc
ggggttgggatcaggtttgaaggaccgttagtccaacaaggaggtggaatgaggtttgag
ggtccttctgtgccaggaggtggcctcagaattgaagggcctctgggtcaaggtggtcca
agatttgaaggctgtcatgctttaaggtttgatgggcagccaggtcagccatcactcttg
ccaagatttgatggattacatgggcagccaggtcctagatttgaaagaactggtcagcca
ggaccacagagatttgatggaccacctggacagcaagttcaaccaagatttgatggtgta
cctcagagatttgatggtccacaacaccagcaagcatcaagatttgatattcctcttggt
cttcaaagcacacgatttgacaatcatccttcacagaggcttgaatcggtgtctttcaat
cagactggtccatataatgatccacctggtaatgcttttaatgccccatcccaaggactg
cagttccaaagacatgaacaaatgtttgattcacctcaaggaccaaattttaatggacca
catggccctggaaaccagagtttctccaatccacttaacagagcttctggacactatttt
gatgaaaagaatcttcagagttcccagtttggaaactttggcaatttacctgctccaata
acagtaggaaatattcaggcatctcaacaggttcttagtggtgttgctcagccagtagca
tttggccaaggacaacagtttttgccggttcatccacaaaatcctggagcatttgttcag
aatccttcgggagctcttcctaaggcatatcctgataatcatctcagtcaggtggatgta
aatgaattattttcaaaactattaaaaacaggaattctcaaattgtctcagcctgattca
gctacaacacaagtaagtgaagttgctgctcagcctcccccagaagaggaggaagatcaa
aatgaagatcaagatgttccagatcttaccaattttacaattgaagaattgaaacaacgt
tatgatagtgttataaatcgactatacactggtatacagtgttactcttgtggaatgagg
tttacaacatcacagacagatgtatacgcagatcacttggactggcattatcggcaaaat
agaactgaaaaagatgttagcagaaaagtcactcatagacgttggtactacagtttaaca
gactggatagaatttgaggaaatagctgatttggaagaacgtgcaaagagccagtttttt
gaaaaggtgcatgaagaagttgtgctcaagactcaggaggctgctaaagaaaaggagttc
caaagtgtacctgctggaccagctggagcagttgagagttgtgaaatctgtcaagaacag
tttgaacaatactgggatgaagaggaggaggaatggcatttgaaaaatgctattagagta
gatggaaagatttatcatccatcatgttatgaagattatcaaaatacatcttcatttgat
tgtacaccatctcccagcaagacaccagttgaaaaccctttgaacattatgttgaacatt
gtcaaaaacgaattgcaggaaccctgtgaaagtcccaaagttaaggaagaacgaattgat
accccaccagcttgtacagaggaaagcatagcaacacccactgaaattaaaacagaaaat
gatacagtcgagtcagtttaa
DBGET
integrated database retrieval system
