Canis lupus familiaris (dog): 477615
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Entry
477615 CDS
T01007
Symbol
PRPF40B
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X2
KO
K12821
pre-mRNA-processing factor 40
Organism
cfa
Canis lupus familiaris (dog)
Pathway
cfa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
477615 (PRPF40B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cfa03041
]
477615 (PRPF40B)
Spliceosome [BR:
cfa03041
]
Complex A
U1 snRNP components
U1 related factors
477615 (PRPF40B)
Complex B
477615 (PRPF40B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF4936
RhoGAP-FF1
WW_2
Motif
Other DBs
NCBI-GeneID:
477615
NCBI-ProteinID:
XP_005636923
Ensembl:
ENSCAFG00000008513
VGNC:
45027
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All DBs
Position
27:41219770..41240081
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AA seq
904 aa
AA seq
DB search
MAGPERSSGSYFLSVPDSGPRPPAAPAPFPPGPPMMPPPFMPPPGIPPPFPPMGLPPMSQ
RPPAIPPMPPGIMPPMLPPMGAPPPLTQIPGMVPPMMPGMLMPAVPVTAATAPGADTASS
AVAGTGPPRALWSEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELLLSQCPWKEYKSDT
GKPYYYNNQSKESRWTRPKDLDDLEALVKQEAAGKQQQQQPQILQPQPPQPQPEPPPGPP
GPTPLPLGLLEPEPGGSEDCDMSEAAQPVEQGFLQQPEEGPSSAAGQHQPPQQEEEESKP
EPERSGLSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAF
NAYKAQREKEEKEEARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGELEVWAVVPE
RDRKEVYDDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNP
SFAQDHQLQNMDKEDALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQTFLDEL
HETGQLHSMSTWMELYPAVSTDVRFANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKD
ILKDRGFCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEAR
RMRRREAAFRSMLRQAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQTEC
QHLHTKGRKHGRKGKKHHRKRSRSPSGSESEEEELPPPSLRPPKRRRRNPSESGSEPSSS
LDSVESGGAALGGRGSPSSRLLLGSDHGLRKAKKPKKKTKKRRHKSNSPESETDPEEKAG
KESDEKEPEQDKDRELRRAEVPNRSPGFGIKKEKTGWDTSESELSEGELERRRRTLLQQL
DDHQ
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atggcaggaccagagagaagcagtggaagctattttctatcggttcccgattctggtccc
cggcccccagcagcgcctgcccccttcccaccggggccccccatgatgccaccacccttc
atgcctcctccaggaatccccccaccctttcctccgatgggactgccccccatgagtcag
agaccaccagccatccccccgatgccccccggcatcatgcccccaatgcttccaccaatg
ggggcaccaccgccactcacgcagataccaggaatggtacctcccatgatgccaggaatg
ctgatgccagcggtgcctgtcaccgcagcgacggctccgggtgcggacacagccagctct
gctgtggctgggacaggccctccgagggccctgtggagtgagcatgtggcccctgacggg
cgcatctactactacaatgctgacgacaagcagtccgtgtgggagaagcccagcgtgctc
aagtccaaggcagagttgctgctgtcccagtgtccctggaaagagtacaagtcagacacg
ggcaaaccttactactataacaaccagagtaaggagtctcgctggacccggcccaaggac
ctggatgacctggaggctttagtcaaacaagaggctgcagggaaacagcagcagcagcag
ccccagatactgcagccgcagccacctcagccccagcctgagcccccgcctgggccgcct
ggccccacccctctgcccctgggccttctagagcctgagccaggtgggagtgaagattgc
gatatgtcagaggctgcccagcctgtggagcaggggtttctgcagcagccggaggagggc
cccagcagtgctgctggacagcatcagccaccacagcaggaggaagaggaatcaaagcca
gaaccagagaggtctggcctcagttggagcaaccgggagaaggcaaagcaggccttcaag
gagctgctgagggacaaggctgtcccctccaatgcctcgtgggaacaggccatgaagatg
gtggtcaccgacccccgttacagtgccttgcccaaactgagtgagaaaaagcaggcattc
aatgcctacaaggcgcagcgggagaaggaggagaaggaagaggcccggctaagggccaag
gaggccaagcagaccttgcagcatttcctggagcagcacgaacgcatgacctccaccacc
cgctaccggcgagcagaacagacctttggggagctggaggtgtgggctgtggtccctgag
agggatcgaaaagaggtttatgatgatgtcctcttcttcctggcaaagaaggagaaggaa
caagccaagcagctccggcgccgcaacatccaggccctgaagagcatcctggatgggatg
agtagtgtcaacttccaaactacatggtcccaggcccagcagtacctcatggataacccc
agctttgctcaggaccaccagctgcagaacatggacaaggaagatgcactgatctgcttt
gaggagcacatccgagctttggagagggaggaggaggaggagcgggagcgagcccgcctt
cgggagcggcgtcagcaacgcaagaaccgggaggccttccagaccttcctggacgagctg
cacgagacagggcagctgcactctatgtccacctggatggagctgtacccagcggtcagc
accgatgtccgctttgccaacatgctgggccagccgggctccacccctctggacttgttc
aagttctatgtggaagagttgaaggcacgattccatgatgagaagaagatcattaaggac
atccttaaggaccggggcttctgcgtggaggtgaacacagcctttgaggacttcgcccac
gtcataagctttgacaagagggctgctgcgctggacgcaggcaacatcaagctgaccttc
aatagtctgctggagaaagcagaggcgcgggagagagagcgggagaaggaggaggcgcga
aggatgcggcgccgggaggctgccttccggagcatgctgaggcaggccgtgccggccctg
gagctgggcactgcctgggaagaggtccgtgagcgctttgtgtgcgactcagcctttgag
cagatcaccctggagtcggagcggatccggctcttccgggagttcctgcagactgaatgc
cagcaccttcacaccaaaggccggaagcacggcagaaagggcaagaagcaccatcggaag
cgttcccgctcgccctcaggctccgagtcggaagaggaggagctgcccccgccgtctctc
cgaccccccaagcggagaaggcggaacccctcggagtcaggctctgagccctcgtcctca
cttgattcggttgaaagtgggggtgctgcccttggaggacggggctccccgtcttctcgc
ctcctccttggatcagatcacggccttcggaaagccaagaaaccaaaaaagaaaactaag
aagagaagacacaagtcgaacagtcctgagagcgagacagaccccgaggagaaggctggc
aaggagagtgatgagaaagaacccgaacaggacaaggacagggagctccggcgggcggaa
gtccctaaccgttccccaggttttgggatcaagaaggagaagacgggctgggacacgtca
gagagcgagctgagcgagggcgagctggaaagacggcggcggacgctcctgcagcagctg
gatgaccaccagtga
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