Canis lupus familiaris (dog): 478836
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Entry
478836 CDS
T01007
Symbol
COL5A2
Name
(RefSeq) collagen alpha-2(V) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
cfa
Canis lupus familiaris (dog)
Pathway
cfa04820
Cytoskeleton in muscle cells
cfa04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
478836 (COL5A2)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
478836 (COL5A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cfa00536
]
478836 (COL5A2)
Glycosaminoglycan binding proteins [BR:
cfa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
478836 (COL5A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
TILa
Motif
Other DBs
NCBI-GeneID:
478836
NCBI-ProteinID:
XP_005640450
Ensembl:
ENSCAFG00000014837
VGNC:
39478
UniProt:
A0A8C0N620
A0A8I3PPP2
LinkDB
All DBs
Position
36:complement(30444268..30596870)
Genome browser
AA seq
1499 aa
AA seq
DB search
MAAACVRASPLLLVAVLVGRCVAVTAQDDGDDEGYGEEIACTQNGQMYLNRDIWKPAPCQ
ICVCDNGAILCDKIQCQDVLECADPVTPPGECCPVCPHTTGGSNTNFGRGRKGQKGEPGL
VPVVTGIRGRPGPAGPPGSQGPRGERGPKGKPGPRGPQGIDGEPGVPGQPGAPGPPGHPS
HPGPDGMSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGVGPTGPPG
EPGEPGPMGPIGARGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLPGLKG
HRGHKGLEGPKGEVGATGSKGEAGPTGPMGAMGPMGPRGMPGERGRLGPQGAPGQRGTHG
MPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSQGLPG
TVGTDGTPGAKGPTGSPGTSGPPGLAGPPGSPGPQGSTGPPGIRGQPGDPGVPGFKGEAG
PKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGSMGERGAPGNRGFPGSDGLPGPKG
AQGERGPVGSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPG
PPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPG
LAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERG
EPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRG
GIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENG
PTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRG
TQGPPGATGFPGSAGRVGPPGPPGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAG
PPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVG
PTGAPGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPG
SQGAPGTPGPVGAPGDAGQRGDPGSRGPVGPPGRIGKRGLLGPQGPRGDKGDHGDRGDRG
QKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGPPG
VRGSVGEAGPEGPPGEPGPPGPPGPPGHLTAALGDIMGHYDESMPDPLPEFTEDQAAPDD
RNKTDPGVHATLKSLSSQIETMRSPDGSKKHPARTCDDLKLCHSAKQSGEYWIDPNQGSV
EDAIKVYCNMDTGETCISANPSSIPRKTWWASKSSDHKPIWYGLDMNRGSQFVYGDHQSP
NAAITQMTFLRLLSKEASQNITYICKNSVGYMDDQAKNLKKAVVLKGSNDLEIKAEGNVR
FRYIVLHDTCSKRNGNVGKTVFEYRTQNVARLPIVDLAAVDVGSTDQEFGIEIGPVCFV
NT seq
4500 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagcctgcgtgcgggcgagcccgctgctcctcgtcgccgtcctcgtcggccgc
tgcgtggcggtgacagcgcaggacgacggcgacgacgaaggatatggtgaagaaatcgcc
tgcactcagaatggtcagatgtacttaaacagagacatttggaaacctgccccttgccag
atctgtgtctgtgacaatggagccatcctctgtgacaagatacagtgccaggatgtcctt
gaatgtgctgaccctgtaactccccctggagaatgctgtcctgtctgcccacatacaact
ggaggtagcaataccaactttggtagaggaagaaagggacaaaaaggagaaccaggatta
gtgcctgttgtaacaggcatacgtggccgtccaggaccagccggacctccaggatcacaa
ggaccaagaggagagaggggcccaaaaggaaagcctggtcctcgtggtcctcagggaatt
gatggagaacccggggttcctggtcaacctggtgccccagggccccccggacatccatcc
cacccagggcctgatggcatgagcaggccattttcagctcagatggctgggttagatgag
aaatctggacttgggagtcaagtaggactcatgcctggctctgtgggtcctgttggccca
agaggacctcaaggcttacaagggcagcaaggtggtgttggccctacaggacctcctggt
gaacccggtgaacctggaccaatgggtccaattggagcacgtggaccagagggtcctcct
ggaaaacccggtgaagatggtgaacctggtagaaatggaaatcctggtgaagtgggattt
gcaggatctccaggagctcgaggatttcctggggctcctggtcttccaggcctgaagggt
caccgaggacacaaaggtcttgaaggccctaaaggtgaagttggggcaacgggttccaag
ggtgaagctggccctactggtccaatgggtgccatgggtccaatgggcccaaggggaatg
ccaggagaaagggggagacttgggccacagggggctcctggacaacgaggcacacatggt
atgcctggaaaacctgggccaatgggtcctcttgggatacctggatcatctggttttcca
ggaaatcctgggatgaagggagaagcaggtcccactggagcaagaggccccgaaggtccc
cagggtcaaagaggtgaaactgggccaccaggcccagttggctctcaaggtcttcctggt
acagtaggaactgatggtacacctggtgccaaaggcccaacgggctctccgggtacctcc
ggtcctcctggtttggcagggccacctggatctccagggcctcagggtagcacgggacct
ccaggaattcgaggccaaccgggcgatccaggagttccgggtttcaaaggagaagctggc
ccaaaaggggaaccagggccacatggtattcagggtccaataggcccacctggtgaagaa
ggcaagagaggtccccgaggtgatccaggaacagtcggtcctccaggctccatgggagaa
aggggtgctcctggcaatcgtggttttccaggctctgatggcttaccgggaccgaagggg
gctcaaggagagaggggtcctgtaggttcttcaggacctaaaggaagtcagggggatcca
ggacggccaggcgaacctgggcttccaggtgctcggggtctgacaggaaatcctggtgtt
caaggtcctgaaggaaaacttgggcctttgggtgctccaggggaggatggccggccaggc
cctccaggctccataggaatcagagggcagccgggaagcatgggtcttccaggccccaaa
ggtagcagtggtgaccctggaaaacctggagaggcgggaaatgctggtgttcctgggcag
aggggagctcctggaaaagatggtgaagtcggtccttctggtcctgtgggccccccgggt
ctcgctggggagagaggagagcagggacctccagggcccactggctttcaggggcttcct
ggtcctccagggccccctggggaagggggaaagccaggtgaccagggagttcctggagat
cctggagcagttggcccattaggacctagaggagaacgcggaaacccgggggagagagga
gaaccaggaataaccggactccctggggagaagggaatggctggaggccacggccctgac
ggcccaaaaggcagtccaggaccatctgggacccctggagacacaggcccaccaggtctt
caaggtatgccaggagaaagaggaattgcaggaactcctggccccaagggtgacagaggt
ggcataggagagaagggtgctgaaggaacagctggaaatgatggagcaagaggtcttccc
ggccccttgggtcctccaggtcctgcaggtcccactggagaaaagggtgaacctggccct
cgaggtttagttggccctcctggctcccgtggcaatcccggttctcgtggtgaaaatggc
ccaaccggggctgttggttttgctggacctcagggtcccgatgggcagcctggagtgaaa
ggtgagcctggcgagccagggcagaagggagatgctggctctcctggaccacaaggtcta
gcagggtccccgggacctcatggtcctaatggtgttcctggactcaaaggtggccgagga
actcagggtccacctggtgcaacagggtttcctggttctgccggcagagttggacctcca
ggccctcctggagctccgggacctgcggggcccctaggggaacctgggaaggagggacct
ccaggtcttcgtggggaccccggctctcatgggcgagtgggagatcgaggaccagctggc
ccccctggtggcccaggagacaaaggagacccaggagaagatgggcaacctggtccagat
ggcccccctggtccagcaggcactactggacagagaggaattgtgggcatgccagggcag
cgtggggagcgaggcatgcctggcttgccaggcccagcgggcacaccaggaaaagtagga
cctaccggcgcaccaggagataaaggtccgcctggacctgtgggacccccaggctcaaat
ggccccgtaggggagcctggccctgaaggtccagctggtaacgatggtactccgggacgg
gacggtgctgttggggaacgtggtgatcgtggagacccgggacctgcaggtctgccgggc
tctcagggtgcccctggaaccccgggccctgtcggtgctccaggagatgcaggacaaaga
ggagatccgggttctcggggccctgtaggaccacctggtcgaatcggaaaacgtggctta
cttggaccccaaggacctcgaggtgacaaaggtgatcatggagaccgaggtgaccgaggt
cagaagggccacagaggcttcactggtcttcagggtcttcccggacctcctggtcccaat
ggtgaacaaggcagcgctgggattcctggaccatttggcccaagaggtcctccaggtcca
gttggtccctcaggtaaagaaggaaaccctggaccacttgggcctatcgggcctcctggt
gtgcggggcagtgtcggagaagcaggacctgagggtcctcctggtgagcccggtccccct
ggccccccggggccccctggccatcttacagctgctcttggagacatcatgggccactac
gatgagagcatgccagacccactgccagagttcactgaggaccaggctgctcccgatgac
agaaacaagactgacccaggggtccatgcaaccctgaagtcactcagtagtcagattgaa
accatgcgcagtcctgacggctctaagaagcacccggcccggacttgtgatgacctaaaa
ctttgccattctgccaagcagagcggtgagtactggattgatcctaaccagggatctgtt
gaagacgcgatcaaagtttactgcaacatggacacaggagaaacatgtatttcagcaaac
ccatccagcataccacgtaaaacctggtgggccagcaaatcttccgaccataagcctatt
tggtatggtctcgacatgaatagaggatctcagtttgtttacggagaccatcagtcacct
aatgcagccattactcaaatgaccttcttgcgccttttatcaaaagaagcctcccagaac
attacttacatctgcaaaaacagtgtgggatacatggacgatcaagccaagaacctcaag
aaagctgtggttctcaaagggtcaaatgacttggaaatcaaggcggaaggaaatgtcaga
ttccgatatattgttcttcatgacacttgctctaaacgaaatggaaatgtgggcaagacc
gtcttcgagtacagaacgcagaatgtggcgcgcttacccatcgtagatcttgccgctgtg
gatgttggcagcacagaccaagaatttggcattgaaatcgggccagtttgttttgtgtag
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integrated database retrieval system
