Canis lupus familiaris (dog): 479071
Help
Entry
479071 CDS
T01007
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cfa
Canis lupus familiaris (dog)
Pathway
cfa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
479071
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfa03019
]
479071
03036 Chromosome and associated proteins [BR:
cfa03036
]
479071
Enzymes [BR:
cfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
479071
Messenger RNA biogenesis [BR:
cfa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
479071
mRNA degradation factors
5'-3' decay
Decapping complex
479071
Chromosome and associated proteins [BR:
cfa03036
]
Eukaryotic type
Gene silencing
piRNA pathway
479071
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
Motif
Other DBs
NCBI-GeneID:
479071
NCBI-ProteinID:
XP_038333827
Ensembl:
ENSCAFG00000014560
LinkDB
All DBs
Position
3:62843643..62845893
Genome browser
AA seq
482 aa
AA seq
DB search
MSTARTENPVIMGLSSQNGQLRGPVKPSGGPGGGGTQTQQQMNQLKNTNTINNGTQQQAQ
SMTTTIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKWELLMGIFEMGWEKPS
PIQEESIPIALSGRDILARAKNGTGKSGAYFIPLLERLDLKKDNIQAMVIVPTREVALQV
SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDVIKKGAAKVDHV
QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLRKPCEINL
MEELTLKGVTQYYAYVTERQKVLCLNTLFSRLQINQSIIFCNSSQRVELLAKISLLGYSC
FYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFPRGIDIQAVNVVINFDFPKLLETYLHR
IGRSGRFGHLGLAINLITYDDRFNLKNIEEQLGTEIKPIPSNIDKSLYEAEYHSEPVEDE
KP
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggccagaacagagaaccctgttataatgggtctttccagtcaaaatggtcag
ctgaggggccctgtgaagcccagtggtggccccggaggagggggcacacagacacagcaa
cagatgaaccagctgaaaaataccaacacaatcaataatggcactcagcagcaagcacag
agtatgaccaccactattaaacctggtgatgactggaaaaagactttaaaactccctcca
aaggatctaagaatcaaaacttcggatgtgacctccacaaaaggaaatgagtttgaagat
tactgtttgaaatgggagttactgatgggaatttttgaaatgggctgggaaaagccatct
cctattcaggaggagagcattcccattgctttatctggtagggatatcttagctagagca
aaaaatggaacaggcaagagcggtgcctacttcattcccttacttgaacggctagacctg
aagaaggacaatatacaagcaatggtgattgttcccactagagaagttgctctacaggtc
agtcaaatttgcatccaggtcagcaagcacatgggaggggccaaagtgatggcaaccaca
ggaggaaccaatttacgggatgacataatgaggcttgatgacacagtgcacgtggtgata
gctacccctggaagaatcctggatgttatcaagaaaggagcagcaaaagttgatcatgtc
cagatgatagtattggatgaggcagataagttgctgtcacaggattttgtgcagataatg
gaggatattattctcacgctacctaaaaacagacagattttattatattctgctactttc
cctcttagtgtacagaagttcatgaattcccatttgcggaaaccctgtgagattaacctg
atggaggaactaactttgaagggagtaacccagtactacgcctatgtaactgagcgccaa
aaagtactctgcctcaacacacttttttccaggcttcagataaaccagtcgatcattttc
tgtaactcctctcagcgagttgaattgctagccaagatttctctactgggttattcttgc
ttctatatccatgctaaaatgaggcaggaacatcgaaatcgtgtatttcatgatttccga
aatggcttatgccgcaatcttgtttgcactgatttgtttccccgaggtattgatatacaa
gctgtgaatgtggtaataaactttgacttcccaaagctgttagagacctatctccatcgt
attggaagatcaggtcgctttggtcatcttggcttagccatcaacttgatcacatatgat
gatcgcttcaacctgaaaaatattgaggagcagctgggaacagaaattaaaccgatccca
agcaacatcgacaagagcctgtatgaggcagaataccacagcgagcccgtggaggacgag
aagccctaa
DBGET
integrated database retrieval system
