Canis lupus familiaris (dog): 479074
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Entry
479074 CDS
T01007
Symbol
HTT
Name
(RefSeq) huntingtin isoform X2
KO
K04533
huntingtin
Organism
cfa
Canis lupus familiaris (dog)
Pathway
cfa05016
Huntington disease
cfa05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
479074 (HTT)
05022 Pathways of neurodegeneration - multiple diseases
479074 (HTT)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfa03019
]
479074 (HTT)
04131 Membrane trafficking [BR:
cfa04131
]
479074 (HTT)
03029 Mitochondrial biogenesis [BR:
cfa03029
]
479074 (HTT)
Messenger RNA biogenesis [BR:
cfa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
479074 (HTT)
Membrane trafficking [BR:
cfa04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
479074 (HTT)
Mitochondrial biogenesis [BR:
cfa03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
479074 (HTT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_2
HEAT_EF3_N
DNA_pack_N
Motif
Other DBs
NCBI-GeneID:
479074
NCBI-ProteinID:
XP_013968016
Ensembl:
ENSCAFG00000014682
VGNC:
41839
UniProt:
A0A8C0Q3X4
LinkDB
All DBs
Position
3:complement(63660661..63805148)
Genome browser
AA seq
3093 aa
AA seq
DB search
MATLEKLMKAFESLKSFQQQQQQQQQQPPPPPPPQPPQPLPQAQPPLPQPPPPPPPPPPP
GPAVAEEPLHRPKKELSATKKDRVNHCLTICENIVAQSLRNSPEFQKLLGIAMELFLLCS
DDAESDVRMVADECLNRVIKALMDSNLPRLQLELYKEIKKNGAPRSLRAALWRFAELAHL
VRPQKCRPYLVNLLPCLTRISKRPEESVQETLAAAVPKIMASFGNFANDNEIKVLLKAFI
ANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNVLLGLLVPVEGEHSTLLILGVLL
TLRYLVPLLQQQVKDTSLKGSFGVTRKELEVSPSTEQLIQVYELTLHYTQHQDHNAVTGA
LELLQQLFRTPPPELLQALSTPGGGLLNATQQQPGCRSRSSSIVELLAGGGSSCSPVLSR
KQKGKVLFGEAAALDDDSESRSEGSSPAFTASVKGEIGGELAASSGVSTPGSASSATDSV
GHDIITEQPRSQHTLQPDSVDLTSCDLASAATDGDEEDILSHSSSQISAVPSDPAMDLND
GTQASSPVSDSSQTTTEGPDSAVTPSDSSEIVLDGADSQYSGMQIGQPQDEDEETAGILP
DEDADAFRTSSVALQQAHLLKSMGHSRQPSDSSIDKFVSRDEATETGDQENKPCRIKGDI
GQSTDDDSVPLVHCVRLLCASFLLTGEKNVLVPDRDVRVSVKALALSCVGAAVALHPESF
FSKLYKVPLDTMEYPEEQYVSDILNYIDHGDPQVRGATAVLCGTLISSILSRSRFQVGDW
MGTVRTLTGSTFSLADCVPLLQKTLKDESSVTCKLACTAVRHCVMSLCSSSYSELGLQLI
TNVLTLKDSSYWLVRTELLETLAEIDFRLVSFLETKAENLHRGTHHYTGLLKLQERVLHD
VVIYLLGDEDPRVRHVAAAALMRLVPKLFYKCDQGQADPVVAVARDQSSVYLKLLMHEAQ
PPSHFSVSTITRIYRGYNLLPSMTDVTVENNLSRVIAAVSRELVTSTTRALTFGCCEALC
LLSTAFPVCIWSLGWHCGVPPLSTSDESRKSCTVGMATMILTLLSSAWFPLDLSAHQDAL
VLAGNLLAASAPKSLRSSWTSEEEANPATSKQEEVWPALGDRTLVPMVEQLFSHLLKVIN
ICAHVLDDVAPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGEPASVPLSPKKGSEASPAS
RQSDAPGPVTANKSSSLGSFCHLPSYLKLHDVLKATHANYKCVEEILGYLKSCFSREPVM
ATVCVQQLLKTLFGTNLASQFDGLSSNPSKSQGRAQRLGSSSVRPGLYHYCFMAPYTHFT
QALADASLRTMVQTEQDHGTSGWFDVLQKVSTQLKTNLTSATKNRADKNAIHNHIRLFEP
LVIKALKQYTTTTSVQLQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQF
RESEAIIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVH
DLFVLRGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLS
RQIADVILPMLAKQQMHIDSHEALGVLNTLFEILAPSSLRPVDMLLRSMFVTPDTMASVS
TVQLWISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCPIINRLRDGDSTSIPEEHH
EGKQMKTLPEETFSRFLLQLVGILLEDIVTKQLKVEMSEQQHTFYCQELGTLLMCLIHIF
KSGMFRRITAAASRLFTVDSTDGSFYGLERLNARVRAMVPTHPALVLLWCQILLLVSHTD
YRWWAEVQQTPRRRSLSSTKSLNPQMCGEEEDPDAACKLGMCNREIVRRGALILFCDYVC
QNLHDSEHLTWLIVNHIQDLINLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCENLSTP
TTLKKTLQCLEGIHFSQSGAVLTLYVDKLLCTPFRVLARMVDTLACRRVEMLLAANLQSG
MAQLPVEEVSRVQEYLQRSGLAQRHQRLYSLLDRLRLATAPGSRGPSPPVTSHPLDGDGP
LALEIVIPDKDWYLRLVKSQCWTRSDSALLEGAELVNRIPPSDMSTFMMNSEFNLSLLAP
CLGLGMREISGGQRSPLFEAARLVTLDRVTSLVQQLPAVHHVFQPFLPMEPTAYWSKLND
LFGDAVLYRSLTTLARALAQYLLVFSKLPSHLHLPPEKERDTVKFVVMTLEALAWHLIHE
QIPLSLDLQAGLDCCCLALQLPSLWSVLSSPEMVTHACSLIHCVRFILEAVVVQPGDQLL
SPERRVNMPKAARVDEVDPNTQNLAYITTACQMVAEMVESLPSVLALGHKRNSNTPAFLT
SVLRNIVISLARLPLVNSYTRVPPLVWKLGWSPEPGGDFGTAFPEIPVEFLQEKEVFKEF
IYRINALGWTSRTQFEETWATLLGVLVTQPLVMEQEESPPEEDTERTQINVLAVQAITSL
VLSAMTVPVAGNPAVSCLEQQPRNKPLKALDTRFGRKLSIIRGIVEQEIQAMVSKRENIA
THHLYQAWDPVPSLSPATTGALISHDKLLLQINPERELGNMSYKLGQVSIHSVWLGNSIT
PLREEEWEEEEEEEADVPAPASPPTSPVNSRKHRAGVDIHSCSQFLLELYSRWILPSGSA
RRTPIILISEVVRSLLVVSDLFTERTQFEMMYLTLTELRRVHPAEDEILIQYLVPATCKA
AAVLGMDKAVAEPVSRLLETTLRSSHLPSKVGALHGALYVLECDLLDETAKQLVPVISDY
LLSNLKGAAHCVNIHSQQHVLVMCATAFYLIENYPLDVGPEFSASIIQMCGVMLSGSEES
TPSIIYHCILRGLERLLLSEQLCRLDAESLVKLSVDRVNVHSPHRAMAALGLMLTCMYTG
KEKISPGRTSDPSPTAPDSESVIVAMERVSVLFDRVRKGFPCEARVVARILPQFLDDFFP
PQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQTLHSTGQSSMVRDWVMLSLSNFTQRTPV
AMAVWSLSCFFVSASTSPWVSAVLPHVISRMGKLEQVDVNLFCLVATDFYRHQIEEELDR
RAFQSVFEVVAAPGNPYHRLLTCLRNVHKVTMC
NT seq
9282 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccctggaaaagctgatgaaggccttcgagtccctcaagtccttccagcagcag
cagcaacagcagcagcagcagcctccgccgccgccacctcctcagcctcctcagccgctg
ccgcaggcgcagccgccgctaccgcagccgcccccgccgcccccgcccccgccgcccccg
ggcccggcggtggccgaagagccgctgcaccgaccaaagaaagaactctcagctaccaag
aaggaccgcgtcaatcattgtctgacaatatgtgaaaacatagtggcacagtcactcaga
aattctccagaatttcagaaacttctgggcatcgctatggaactttttctgctgtgcagt
gatgatgcagagtcggatgtccggatggtggctgacgagtgcctcaacagagtcataaaa
gccctgatggactctaatcttccgaggttacagttagaactctataaggaaatcaaaaag
aacggtgctccccggagcctgcgcgctgccctgtggaggtttgctgagctggctcacctg
gttcggcctcagaaatgcaggccttacttggtaaaccttttgccttgcctgactcgaata
agcaagagacctgaggaatctgttcaggagaccttggctgcagctgtacccaaaattatg
gcttcttttggcaattttgcaaatgacaatgaaattaaggttctattaaaggctttcata
gcgaatctgaagtcaagctccccgaccattcgacggacagcagctggctcagcagtgagc
atctgccagcactcaagaaggacacagtatttttacagctggctactaaatgtgctttta
ggtttgctggtccctgttgagggtgaacactctaccctcctgattcttggagtgctgctc
acactgaggtatctggtgcctttactgcagcagcaggttaaggacacgagcctgaaaggc
agctttggagtgacacggaaagaactggaagtctctccctcaacagagcaactcatccag
gtttatgaactgaccttgcattatactcagcaccaagaccacaacgctgtgactggagcg
ctggagctcctgcagcagctgttccgcacgcccccgcccgagctcctgcaggctctgagc
acacccggtggcgggctgctcaatgccacgcagcagcagcctgggtgccggagccgcagc
agcagcatcgtggagctcctagctggagggggttcttcatgcagccctgtcctttcaaga
aaacaaaaagggaaagtgctcttcggagaagcggcagccttggatgatgactccgagtcc
aggtcggagggcagcagccccgccttcacagcctcggtcaagggtgagattggtggtgag
ctggctgcctcttccggggtctctactcctggctctgccagttcagccaccgactccgtg
gggcatgacatcatcaccgagcagccccggtcacagcacacactgcagccagactcagtg
gatctgaccagctgtgacctggcgagtgctgccaccgatggggatgaggaggacatcttg
agccacagctccagccagatcagtgctgtcccgtcggacccagccatggacctgaacgat
ggcacccaggcctcctccccggtcagcgacagctcccagaccaccactgaagggccggat
tcagctgtgaccccctcagacagttctgaaattgtgttagatggtgctgacagccagtat
tcggggatgcagattggacagccacaggacgaggatgaggaaaccgcaggcattcttcca
gatgaagatgcagatgctttcagaacctcttcagttgcccttcagcaagcacatttattg
aaaagcatgggccacagcaggcagccctctgacagcagtatagacaagtttgtctccaga
gatgaagctaccgaaacaggagatcaagaaaacaagccttgccggatcaaaggtgacata
ggacagtctaccgatgatgattctgttcctcttgtccattgtgtccgcctcctgtgtgcg
tcatttttgctgactggggagaaaaatgttttggttccagacagggacgtgcgggtcagt
gtgaaggcactggcactcagctgtgttggagctgctgtggcccttcatcctgaatctttc
ttcagcaaactttataaagtacctcttgacaccatggaataccctgaggagcagtatgtg
tcagacatcctgaactacatcgaccatggagacccccaagtcagaggagccacagccgtt
ctctgcggaaccctcatctcctctatcctcagcagatcccgcttccaggtgggagattgg
atgggcaccgtcaggaccctgacaggaagtacattttctctggcggactgtgttcctttg
ctgcagaaaactttgaaggatgaatcttctgttacttgcaagttggcttgtacagctgtg
aggcactgtgtcatgagtctctgcagcagtagctatagtgaattgggattacagctgatc
accaacgtgctgaccctaaaggatagttcctactggttggtgaggacggagctcttggaa
actcttgcagagattgactttcggttggtgagctttttggagacaaaagcagaaaacctg
cacagagggactcatcattacacagggcttttaaaactacaagaacgagtgctccatgat
gttgtcatctatctgcttggggatgaggaccccagagtgcggcatgttgctgcagcggca
ttaatgaggcttgtcccaaagctgttttataagtgcgaccaagggcaagctgaccccgtg
gtggctgtggcgcgagatcaaagcagtgtttacctgaagctcctcatgcacgaggcgcag
cctccatctcacttctccgtcagcaccataaccagaatctacagaggctataacttacta
ccgagcatgacagacgtcactgtggaaaacaacctctccagagtcattgcggcagtttcc
cgtgaattggtcacgtcaaccacacgcgcgctcacatttggatgctgcgaagctctgtgt
ctcctttcaactgcctttcctgtctgcatttggagtttaggttggcattgtggggtgcct
ccactaagcacctcagatgagtctagaaagagctgtactgttggcatggccacgatgatc
ctcaccttgctctcgtctgcttggttcccactggatctctctgcccatcaggatgctttg
gttttagccggaaacttacttgcagccagtgcccccaaatctctgagaagttcatggacc
tctgaagaggaggccaacccagcaacctccaagcaggaagaggtctggccagctttgggt
gaccggaccctggtgcccatggtggagcagctcttctcccacttgctgaaggtgattaac
atctgtgctcacgtcttggacgatgtggctcccggaccagcaataaaggcagccttgccg
tctctgacaaaccctccttccctaagtcccatccgacggaagggaaaggagaaagaacct
ggagagccagcctctgtgcccttgagccccaagaaaggcagcgaagccagtccagcctct
cgacaatctgatgccccaggacctgttacagcaaataagtcctcgtcgttggggagtttc
tgtcaccttccttcatatctcaaattgcacgatgtcctgaaagctactcacgccaactat
aagtgtgttgaggagatactagggtatctgaaatcctgtttcagtcgagaaccagtgatg
gcaactgtttgtgttcaacagttgttgaagactctctttgggacaaacttggcctcccag
tttgatggcttatcttccaaccccagcaagtctcaaggccgagcacagcgtctgggctcg
tccagcgtgagaccaggcttgtatcattactgtttcatggctccatacacccacttcacc
caggccttagccgatgccagcttgaggaccatggtgcagacggagcaggaccacggcaca
tcagggtggtttgatgtgcttcagaaggtgtctacgcagttgaagaccaacctcacgagt
gccactaagaaccgtgcagataagaatgctattcataatcacatacgtttgttcgagcct
ctggttataaaagctttaaaacagtacacaaccacaacgtctgtgcagctgcagaggcag
gttttagacttgctggcacagctggttcagttacgggtcaattactgtcttctggactca
gatcaggtgtttattggatttgtgctgaagcagtttgagtacattgaagtaggccagttc
agggaatcagaggcaattattccaaacatctttttcttcctggtattactatcttatgaa
cgctatcattcaaaacagatcattggaattcctaaaatcattcagctctgtgatggcatc
atggccagtgggaggaaggctgtgacacatgccataccggccctgcagcccatagtccat
gatctctttgtactgagaggaaccaataaagccgatgcaggaaaagagcttgaaacccaa
aaagaggtggtggtgtcaatgttactgagactcatccagtaccatcaggtgctggagatg
ttcatcctggttctacagcagtgccacaaggagaatgaagataagtggaagcgactgtct
cggcagatagcagatgtcatcctcccgatgttagccaagcagcagatgcacattgattct
catgaagcccttggagtgttaaatactttatttgagatcctggctccttcttccctccgt
cctgtggacatgcttttacgaagtatgtttgtcactccagatacaatggcatctgtgagc
actgtccaactgtggatatcaggaatcctagccattttgagagttctaatttcccagtca
actgaagatattgttctttctcgtattcaggagctctccttctccccatatttaatttcc
tgtccaataattaataggttaagagatggggatagtacttcaataccagaagaacaccat
gaagggaaacaaatgaagactttgccagaggaaacattttcaaggtttttactacaacta
gttggcattcttttggaggatattgttacaaaacagctaaaagtagaaatgagtgaacag
caacatactttctattgtcaagaactaggcaccctgctcatgtgtctgatccacatcttc
aagtctggaatgttccggagaatcacagcagctgcctctagactcttcacggtagacagc
accgacggcagtttctatggcctagagaggctgaacgcccgggtgcgtgccatggtgccc
acacatccagccctcgtgctgctctggtgccagatcctgctgctcgtcagccacaccgac
taccgctggtgggcagaggtgcagcagacccccaggagacgcagtctgtccagtaccaag
tcactcaacccccagatgtgtggagaagaggaggatcccgatgcagcatgcaagcttggg
atgtgcaatagagaaatagtgcgaaggggagctctcattctcttctgcgattatgtctgt
cagaacctacacgattcagagcacctaacgtggctcatcgtgaatcatatccaggacctg
atcaatctgtcccatgagcctcccgtgcaggattttattagtgctgttcatcggaactct
gctgccagtggccttttcatccaggcaattcagtctcgttgtgaaaatctttccacccct
accactctgaagaagacgcttcagtgcttggaagggatccacttcagccagtcgggtgcc
gtgttaaccctatatgtggacaagcttttgtgcactccgttccgtgtgctggctcgcatg
gtcgacactctagcctgtcgccgggtggaaatgcttctggctgcaaatttacagagtggc
atggcccagctgccagtggaggaagtgagcagagtccaggagtacctgcagcgcagcggg
ctggcccagagacaccaaaggctctactccctgctggacaggctgcgtcttgccactgca
ccgggctcacgtggcccttcacctccagttacctcccacccgctggacggggatgggccc
ctggcactagagatagtgattccagataaagactggtacctacgtctagtcaaatcccag
tgctggactaggtcagattctgcactgctagaaggggcagaactggtgaatcggattcct
cccagtgacatgagtacattcatgatgaactcggaattcaacttaagtctgttggctcca
tgcctgggcctgggcatgcgcgaaatctccggaggccagaggagtcccctttttgaagca
gctcgcctggtgacactggaccgcgtgaccagcctggtccagcagctccctgctgtccat
catgtgttccagccattcctgcctatggagcccaccgcctactggagcaagttgaatgat
ctatttggggatgccgtgttgtatcggtccttgaccactctggcccgggccctagcccaa
tacctgcttgtgttctccaaactgcccagccatttgcacctacctcctgagaaggagagg
gacactgtgaagtttgtggtcatgacccttgaggccctggcatggcatttgatccatgag
cagatcccactgagtctggaccttcaggcaggcctcgactgctgttgcctggctctgcag
ctgcccagcctctggagtgtgctctcctccccagagatggtgacccatgcctgctctctc
attcactgtgtccgcttcatcctagaagccgtcgtggtgcagcctggggaccagctgctt
agcccagaaaggagggtgaacatgccaaaggccgccagagtggacgaagtagatccaaac
acacaaaatctagcatatatcaccacagcctgtcagatggtggcagaaatggtggagtct
ttgccatcagtgttggccttggggcacaagaggaacagcaacaccccagcgtttctcaca
tcagtgctgaggaacatcgtcatcagcctggctcgcttacccctcgtcaatagctacacg
cgtgtccccccgctggtttggaaactcggatggtcgcctgagccaggaggggacttcggc
acagccttccctgagatcccagtggagttcctccaggagaaggaagtctttaaagagttc
atctaccgcatcaatgcactaggatggaccagccgcacccagtttgaggaaacgtgggcc
accctccttggtgtcctggtgactcagccccttgtgatggagcaggaagagagcccaccg
gaagaagacacagagaggacccagatcaacgtcctggctgtgcaggccatcacctccctg
gtgctgagtgcaatgactgtgcctgtggctggcaacccagctgtgagctgcttggagcag
cagccccggaacaagcccctgaaagccctcgacaccaggtttgggaggaagttgagcatt
atccgaggaattgtagagcaggaaatccaagcaatggtttcaaagagagagaatatcgcc
acgcatcacttataccaagcgtgggaccctgtcccttctctgtctccagctactacaggt
gccctcatcagccacgacaagcttctgctgcagatcaaccccgagcgggagctgggaaac
atgagctataagcttggccaggtgtccattcactccgtgtggctggggaacagcatcaca
cccttgagagaggaggagtgggaggaggaggaagaagaggaggctgatgtccctgcacct
gcatcaccacccacatcacccgtcaactccaggaagcaccgggctggagtcgacattcac
tcctgttcccagtttttgcttgaattgtacagtcgctggatcctgccatcaggttcggcc
agaaggacacccatcatcctgatcagtgaagtggttcgatccctcctcgtggtctcagac
ttattcactgagcgcacccagtttgagatgatgtatctgacgctgacggaactgcggagg
gtgcaccctgcagaagacgagattctcattcagtacctggtgcccgccacctgcaaggca
gctgccgtccttggaatggacaaggccgtggcagagccagtcagccggctgctagagacc
acgctgaggagcagccaccttcccagcaaggtcggagccctgcacggtgctctctacgtg
ctggagtgtgacctcctggatgagacggcaaagcagctcgtcccagtcatcagcgactac
ctcttgtccaacctcaaaggggcagcacactgtgtgaacattcatagccagcagcacgtg
ctggtgatgtgcgccactgccttttacctgatcgagaactaccccctggatgtaggcccg
gaattctctgcatcaataatacagatgtgtggggtgatgctgtctggaagtgaggagtcc
accccgtctattatctaccactgtatcctgcggggtctggagcgcctcctgctctctgaa
caactctgccggctggatgcagagtccctggtcaagcttagtgtggacagagtgaacgtg
cacagcccacatcgggccatggctgccctgggcctgatgcttacctgcatgtacacaggg
aaggagaaaatcagcccgggcagaacctcagaccccagccccaccgccccagacagcgag
tcagtgattgtggctatggagcgtgtgtctgtactttttgacagggtcaggaaagggttc
ccctgtgaagccagagtggtggcacggatccttcctcagtttttagatgacttcttccca
ccccaggacgtcatgaacaaagtcattggagaatttctgtccaaccagcagccgtaccca
cagttcatggccaccgttgtatataaggttttccagactctgcacagcaccgggcagtcg
tccatggtccgagactgggtcatgctgtctctgtccaacttcacacaaaggacgccagtg
gccatggccgtgtggagcctctcctgcttctttgtcagtgcttccaccagcccgtgggtc
tcggcagtccttccccacgttatcagcaggatgggcaagctggaacaagtggacgttaac
ctcttctgcctggtggccacggacttttacagacaccagatagaggaggagctggaccgc
cgggccttccagtctgtgttcgaggtggtcgcggcaccaggaaacccgtatcatcgattg
ctgacttgtttgcggaatgtccacaaagtcaccatgtgctga
DBGET
integrated database retrieval system
