Canis lupus familiaris (dog): 479839
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Entry
479839 CDS
T01007
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X5
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cfa
Canis lupus familiaris (dog)
Pathway
cfa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
479839 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfa03019
]
479839 (PARN)
Enzymes [BR:
cfa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
479839 (PARN)
Messenger RNA biogenesis [BR:
cfa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
479839 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
RRM_1
NCBP3
Motif
Other DBs
NCBI-GeneID:
479839
NCBI-ProteinID:
XP_038402434
Ensembl:
ENSCAFG00000018795
VGNC:
53535
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All DBs
Position
6:29992537..30147919
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AA seq
647 aa
AA seq
DB search
MEIIRSNFKSNLHKVYEAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQG
FDFNKVFRNGIPYLNHEEERQLREQYDEKRLQSNGAGALSYVSPNTSKCPVTIPEDQKKF
IDQVVEKIENLLQSEESKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVDTLETEKKERYIV
ISKVDEEERKRREQQKLAKEQFSRFVSLNQEELNDAVGFSRVIHAIANSGKLVIGHNMLL
DVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLK
ETPFNPPKVESAEGFPSYDTATEQLHEAGYDAYITGLCFISMANYLGSFLSPPKIHVSAR
SKLIEPFFNKLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNI
HISWIDDTSAFVSLSQPEQVQIAVNTSKYAESYRIQTYAQYVGKKREEKQIKRKWTEDTW
QEVERKRLNTQCISYALQNHYYHTNSLTATSTVGKRNLSPSPAEADLEARISGEISDTEL
EQTESCAESLSEGKKKAKKLKRMKKDLSPAGAIPDSPAKLFEVPDTW
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atggagataatcaggagcaattttaagagtaaccttcacaaagtgtacgaggccatagag
gaggccgacttcttcgccatcgatggggagttttcaggaatcagtgatggaccttcagtc
actgcactaacaaatggttttgacactccagaagaaaggtatcagaagcttaaaaagcat
tccatggactttttgctgtttcagtttggcctttgcacttttaagtatgactacacagat
tcaaagtatataacaaagtcatttaacttctatgtattcccgaaacctttcaataggtcc
tcaccagatgtcaagtttgtttgtcagagctcaagcattgactttctagcaagccaagga
tttgattttaataaagttttccgcaatggaattccatatttaaatcatgaagaagaaaga
cagttaagagagcagtatgatgaaaaacgtctgcagtccaatggtgcaggagctctgtct
tatgtatctccaaacacttcaaaatgtcctgtgacaattcctgaggaccagaagaagttt
attgaccaagtggtagagaaaatagaaaatttactacaaagtgaagaaagcaagaacttg
gatttagagccatgcactgggttccaaagaaaactaatctatcagactttgagctggaag
tatcccaaaggcattcatgttgacactttagaaactgaaaagaaggagcgctacatcgtc
atcagcaaagtagatgaagaagagcgtaagaggagggagcagcagaaactcgctaaggaa
cagttttctcggtttgtttctctaaatcaggaagaactgaatgatgctgtgggattttct
cgagtcattcatgccattgccaattcgggaaaactcgttattggacacaatatgctcttg
gatgtcatgcacacagttcatcagttttactgcccactgcctgcggacttaaatgagttt
aaggagatgacaacatgtgttttccccagactcttggatacaaaattgatggccagcaca
caaccttttaaggatatcattaacaacacatcccttgcagaattggaaaagcggttaaaa
gagacgcctttcaaccctcctaaagttgaaagtgcagaaggatttccaagttatgacaca
gctactgaacagctccacgaggcaggctatgatgcttatatcacagggctgtgcttcatc
tccatggcgaactacctaggttcttttcttagtcctccgaaaattcatgtgtcggctaga
tcaaaactcatcgaacctttttttaacaagttatttcttatgagagtcatggatatcccc
tatctaaacttggaaggaccagacttgcaaccaaaacgtgatcatgttcttcatgtgaca
ttccccaaagaatggaaaaccagtgacctttaccagcttttcagtgcctttggtaacatt
catatatcctggattgatgatacatcagcatttgtttctctcagccagccggaacaagta
cagattgctgtcaataccagcaaatatgcagaaagctatcggatccagacctatgcccaa
tatgtggggaaaaaacgtgaggagaagcagatcaagagaaagtggacagaagatacttgg
caggaggttgagagaaaacggttaaacactcagtgcatatcctatgctctgcagaatcac
tactaccacaccaacagtcttacagcgaccagcacagtaggaaagagaaacttgagtccc
agcccagccgaggcggacttggaggccagaatatcaggggagatttcggacaccgagctc
gagcagactgagtcctgtgcagaatccctctctgagggaaagaagaaggccaagaaatta
aaaagaatgaagaaggacctttcaccagcaggagccatcccggacagccctgccaagctc
ttcgaagttcccgacacgtggtaa
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