Canis lupus familiaris (dog): 479867
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Entry
479867 CDS
T01007
Symbol
SLX4
Name
(RefSeq) structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
cfa
Canis lupus familiaris (dog)
Pathway
cfa03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
479867 (SLX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cfa04121
]
479867 (SLX4)
03400 DNA repair and recombination proteins [BR:
cfa03400
]
479867 (SLX4)
Ubiquitin system [BR:
cfa04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
479867 (SLX4)
DNA repair and recombination proteins [BR:
cfa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
479867 (SLX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
FokI_D3
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
479867
NCBI-ProteinID:
XP_022275854
Ensembl:
ENSCAFG00000019268
VGNC:
46517
UniProt:
A0A8C0STI9
LinkDB
All DBs
Position
6:38976853..38995126
Genome browser
AA seq
1733 aa
AA seq
DB search
MDESDDDFKELCASFLQRVKKNVSKEVLGERKGQKASNSTQISKPKRTKPTGTRGKTLPG
PREKKTWSGSQAPRTKEQGAPKQQESEPAPPKNGEGSVLASTPLQKGAQTTQTEAAPDSN
SQPPPSCLTVTAPSPSKARTAELVVQRMQQFKRADPERLQHASERCSLEATLEENTPRGP
PEEMTAGHGPGYGLLVLESTLQQGLGPHGAATATPEGSLEEAGLFFCQICHKNLSAMNVT
RREQHVNRCLDEAEKALTPSIPRIPECPICGKPFLTPKSRISHLKQCAVKMDVGPQLLLQ
AVRLQTAQPDGACSTQASSFSNHGGLKRKGATNRKELQKKRKVNEPEVPSEDLLVAMALS
RSEMEQEAVPPVLRLESAFSERIRLGAEKKSRKRKAPACPPLLLLQDPETTGRQTEDRVA
QLFAEEMELSSTPPLPASRILQGELEKAGQSLQPPGGKKNFLWEGSALTGAWALEAFYTT
SLVPPLVPQRSAPAEGLAQDSTLPPVLLDQPELGVRTPPRHSAQPVGCGPQNPSPSASQR
EHQALQDLVDLAGEGLNATPWPCSGGLASSGVAAGMDVSSTGLPPTGFVLPPEKHLEGGG
QASLTLGLLLADFRAMVNNPHLSDIQLQTDSGEVLYAHKFVLYARCPLLMQYVNSEGFFA
VEDGDLRSQRVLLSDVSTEAIHALLHYLYTADPGVPPQLAPDLSALAHRFGVSELVLLCE
QAPDMTDSEDTPWKEKEDKDCESRAENFQELLRSMWTGEEEEAEALMKPEGCEEDREKVN
EAEMEEIYEFAATQRELLRGEGAPEIKEKTDPFGEDGPVSVQILGSDQVSGREEAPAKRK
SARQSTPLLLKGQGAGEKAGSPEGALGRSSSPRPSGGCGPGRKEGAFWHSADAPEARMFS
STPRRCPGPSQIMSHLQEDNDTISGKGTESPCIPTHQQAPPWHPPLSQPPRGQSLRGESP
LPVPQSQGRASRAASQDSPLKQRRGRSLLTLFKDPGVQKGEEHSSLLECRNKGILISPEK
SPSIDLTQSKPSCLSSRSQNTPSSKNKEDEIILLLDSDEELELEQTKIKSVFNGPLEERK
VLEVSPKPSELFSVIDVDADQEPFQSPARGEASLPCGDGRLSGNRGSVGSRGTPQLPCDP
DSGPEGDSTTDMSWFVPATPLASRRRDSSSQTQITGLRSRAPVDQPAEVKRWTPLENRGV
PEAASQCSVITPPVSSSGLVSVSAGSPDSRSPARPHPAHPQRCSPAPCPISHLADFTGQP
HRCSPPGPSPPSQVITSEVVEVEDSEDEQEVASCQANSSPLPDSDPPIPVDECHWHVEPL
SPIPIDRLNLEQTGPLSTSSPGSKAGEAPDSSGCSSPALLGTPPARGSCTSQRKSRERSP
RASVPSSSRPSFLNSALWDNWDGEEQKSSELLPPAQTLSDAAAAQKSEGLETPKGAHRKN
LPPKVPITPMPRYSIMETPVLKKELDRFGVRPLPKRQMVLKLKEIFQYTHQTLESDSENE
SQSSQVLPEAPCSQTHTSRTSRAAGRAQLGATSGPLLQRSKGSTKTKGPRNQKQQPGGSI
PPMNLSQAKEESPDPDGDTQLPVSQESVASSVDSSDSSFSSQSSSCEFGVAFESAEDEEG
EEEESASQTAVHAAATEEAVRHYIRSRPALYRKVLLYQPFELSELQAELKQQGIRVATGK
LLDFLDAHCITFTTAVARKEKLERKRRQPAAKKKRGRANRLVRPSPPLAVSSL
NT seq
5202 nt
NT seq
+upstream
nt +downstream
nt
atggatgagtcagatgatgattttaaggaactctgtgccagctttctccaaagggtgaaa
aagaatgtcagcaaggaagtgttgggtgaaagaaagggacaaaaggcctcaaacagcact
cagataagcaaaccgaaaaggaccaaaccaactgggaccaggggcaaaacccttccaggc
ccgagggagaagaaaacttggtctggcagccaggccccaaggactaaagagcaaggggcc
cccaagcagcaggagagtgaaccagctccccccaagaatggagagggaagtgtgcttgcc
tccactccactccagaagggtgcacagaccacccagacagaggctgctccggacagcaac
tcccagccccctccttcctgtctgacagtgacagcgccaagtccctccaaagcccggacg
gcagagttggttgtacagcgaatgcagcagttcaaaagggcagaccctgagcgtttgcag
catgcttcagaaaggtgctccctggaggcgacgcttgaagaaaacaccccacggggccct
ccagaggagatgacagcagggcatgggccgggctacgggctcctcgtgctggagagcacc
ctgcagcagggccttgggccccacggagcagccacagccacaccagagggcagcctggag
gaggcagggctgttcttctgccagatctgccacaagaacctctcggccatgaatgtgacg
cgaagggagcagcacgtgaaccggtgcttggatgaggctgaaaaggcactgacaccctcc
atacctcggatccccgaatgcccaatttgtggcaaaccctttctcaccccaaagagcaga
atcagccacttgaaacagtgtgcagtgaagatggacgtcggcccccagctcctgctccag
gccgtgcggctgcagacagctcagcctgacggggcctgtagcacacaggcatcaagcttc
agcaatcacggaggtttgaagcggaagggagccaccaataggaaggagctgcagaagaag
cggaaggtcaacgagcccgaggtgccatctgaagacttgctggtggccatggctctgtcc
cggtccgagatggagcaggaggccgtgccccccgtgctgagactggaaagcgctttctcc
gagaggataagactgggggcagaaaagaagagtcgcaagaggaaagcacctgcctgccct
cccctgttgttactccaagacccggagaccacagggaggcagaccgaagaccgggtggcc
cagctctttgcggaggagatggagctgtccagcacaccgccacttcctgcgagcaggatc
ctacagggggagctggaaaaggctggccagagtctgcagccgcctggagggaagaagaac
tttttgtgggagggcagtgccctgactggagcctgggctctggaagccttctacaccaca
agcctggtccctcccctggtgccccagcggtctgcccctgccgagggtcttgcccaggac
tccacgctgccacctgtgctgcttgaccagccagagctgggtgtgcgaacaccacctcgc
cacagtgcccagcctgtgggctgtggcccccagaacccatcaccctctgccagccagaga
gagcaccaggccctgcaggaccttgtggacctggcaggagaggggctgaatgccaccccg
tggccctgcagtgggggcttggccagctcaggagtggccgcagggatggatgtgtcgtcc
actggccttccaccgactgggtttgtcctgccacctgagaagcacctggaggggggcggc
caggcttcactcaccctcggtttgctgctggcggacttcagggccatggtcaataaccca
cacctgagcgatatccagcttcagacggacagcggagaggtgctctacgcacacaagttc
gtgctttatgcccggtgcccccttctcatgcagtatgtgaacagtgaaggcttcttcgct
gtggaggatggcgatctgaggagtcagcgtgtgctgctgagtgacgtgagcaccgaggcc
atccatgcgctcctgcactacctctataccgcggaccccggcgtgcctccccagctggcc
cccgacctgagcgctctggcccacaggtttggtgttagtgagcttgttcttctgtgcgaa
caagcacctgacatgacagattcagaggacacaccgtggaaggagaaggaagacaaggat
tgtgaaagccgcgcggagaacttccaagaactcttgaggtccatgtggacaggtgaagag
gaagaagcagaggctttgatgaaacctgagggttgtgaagaagacagagaaaaagtgaat
gaggcagaaatggaagaaatttatgaatttgcagccactcagcgagagctgctccggggg
gaaggggctccagagatcaaggaaaaaactgacccattcggggaggatggtccagtgtcc
gtgcagatcttaggaagtgaccaggttagcggaagagaagaggccccagccaaaaggaag
agcgcaagacagtccacgcccctgctgctcaagggccagggcgcgggagagaaagcaggc
tccccggagggagcgctgggtcgttccagctcccctcgcccttctggaggctgcgggcca
gggagaaaggaaggtgctttctggcactcagctgatgctcctgaggcccggatgttttca
tcaactcccagaagatgccctggaccatcccagataatgagccatctccaggaagacaat
gacaccatctcgggaaaggggacggagagcccctgtatccccactcaccagcaggcaccc
ccatggcacccgcccctgtcacagccccctcggggccagagtctcaggggtgagtcaccc
ttgccagtgccccagtcacaaggcagagcttccagggcggcctcccaggactcaccattg
aagcagaggaggggcaggagcctcctcacattatttaaagatccaggtgtccagaagggc
gaagaacatagttccctgttggaatgcagaaataaagggattctgatctccccagaaaaa
tctccttccatcgacctaacccagtcaaaacctagctgtttgagctccagatctcaaaat
actccatccagcaagaacaaagaagatgagattatccttttattggattcagatgaagag
ctggagctagaacaaaccaaaataaagtcagtttttaatggtcccttggaagaaaggaaa
gttctagaagttagccccaagccttctgagctgttttctgtgattgacgttgatgcagat
caggaacctttccaaagtccagctagaggagaggcttcactgccgtgcggggatgggagg
ctgtcagggaaccggggctctgtggggagcagagggacccctcagctgccgtgtgaccct
gacagtggccctgagggggacagcaccacggatatgtcatggttcgtgcctgccacccca
ctggccagcagaaggcgtgactcttcttcacagacccagataacaggcctcaggtcccgg
gctccagtggatcagccggctgaggtcaagcgctggaccccattagaaaataggggtgtg
cccgaagctgcaagccagtgttccgtcatcacgccccccgtgtcgtcctcaggcctggtc
tccgtcagtgcaggcagccccgacagcaggagccctgccaggccccaccctgcgcacccc
cagcgctgctctccggctccctgtcccatctcccatctggccgatttcactgggcagccc
cacaggtgttcgccgccagggcccagcccaccgagtcaggtcatcacaagtgaagtcgtg
gaggtggaggacagcgaggacgagcaggaggtggcctcctgtcaggccaacagcagcccc
ctgccggacagcgaccctccaattccggtggacgagtgtcattggcatgtggagcccctg
tcacccattcccattgaccgcttgaaccttgagcagacaggccccctgagcaccagcagt
ccgggcagtaaggcaggggaggctccagacagcagtggctgcagctctccggccctcctg
ggcaccccccctgcccgagggagctgcactagccagagaaagtcccgagagaggtcccct
cgggccagcgtgccgtcgagcagcaggccaagctttttgaactcagctctgtgggacaat
tgggatggagaggaacagaagtcttcagagctccttcctcccgcccagacactgagtgat
gctgctgctgctcagaaatcagaagggttggagacgccaaaaggtgctcatcggaagaac
ttgcccccgaaagtgcccatcaccccaatgccaaggtactccatcatggagaccccggta
ctgaagaaagaactggataggtttggggtccgccctctacccaaacgccagatggtccta
aaactgaaggagatattccagtatactcaccagactctggagtcagactctgagaatgag
agccagtcctcacaagtgctcccagaggctccgtgcagccagacccacaccagcaggacc
tccagggctgctggccgtgcccagctcggggccacttctgggcctcttctccaaaggtcc
aaggggtccactaagaccaagggcccccgaaatcaaaagcagcagcctggtggaagcatc
cctccgatgaacctgtcacaggcaaaggaggagtctccagatcctgatggtgacacccag
ctccctgtgtcccaggaatcagtggcctcctccgtggacagcagtgacagctcctttagc
tcacaaagttcttcctgtgagtttggagtggcctttgagtctgcagaggatgaggaaggt
gaagaggaggagagtgcatcccagacagccgtgcatgcagcagccacggaggaggctgtg
aggcactacatccgctccaggccggccctctaccgcaaggtcctgctgtaccagcccttc
gagctgtcagagctgcaggccgagctgaagcagcagggcatccgtgtggccaccgggaag
ctgctggacttcctggatgcccactgcatcaccttcaccactgctgtggcccggaaggag
aagctcgagaggaagaggcggcagcctgcagccaagaagaagaggggcagagccaacagg
ctggtccgcccctccccacccctggccgtgagcagcctgtga
DBGET
integrated database retrieval system
