Canis lupus familiaris (dog): 479956
Help
Entry
479956 CDS
T01007
Symbol
HFM1
Name
(RefSeq) probable ATP-dependent DNA helicase HFM1 isoform X1
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
cfa
Canis lupus familiaris (dog)
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cfa03036
]
479956 (HFM1)
Enzymes [BR:
cfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
479956 (HFM1)
Chromosome and associated proteins [BR:
cfa03036
]
Eukaryotic type
Meiosis-specific proteins
Others
479956 (HFM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_C
ResIII
Hfq
DEXQc_Suv3
AAA_22
Motif
Other DBs
NCBI-GeneID:
479956
NCBI-ProteinID:
XP_022276208
Ensembl:
ENSCAFG00000020187
VGNC:
41672
LinkDB
All DBs
Position
6:60107979..60257033
Genome browser
AA seq
1483 aa
AA seq
DB search
MLKSNDSLFSLDTLFFEKPDEAENYPDNEKLLDWFLPPVPLISEIPDTQALEEEIESHKL
LGQEERPKMLPSNLKMTNENTNYISPTQKFQFAFSSNKCETGDLNLTEAGNHDLPRVPGK
LTYGSQKYKNHIGTEIAPEKNVSGNTKLVNFAEDKGESTSAFRKRLFKISDNIHEGVYSN
DSTNLESSVGSVKIVPTEMNKGESWKCSNSKQKHQYSDINMFTASNAVSASEIREDIFKG
PTFSVASQPHEVQGVTENDLDSLKAVTEIPAKFRSIFKEFPYFNYIQSKAFDDLLYTDRN
FVICAPTGSGKTVVFELAITRLLMEVPLPWSNIKIVYMAPIKALCSQRFDDWKEKFGPIG
LNCKELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHVVKD
ENRGPTLEVVVSRMKTVQSLSPPSENSTVIPMRFVAVSATIPNAEDIAEWLSDGERPAVC
LKMDEKHRPVKLQKVVLGFPCGSNQTEFKFDLTLNYKIAGVIRTYSDQKPTLVFCATRKG
VQQAASVLVKDAKFIMAVEQKQRLQKYAYSIRDSKLRDILIHGVAYHHAGMELSDRKVVE
GAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYAGGMFEEYSETDILQMIGRAGRPQ
FDTTATAVIMTRLSTKEKYIQMLACSDTVESSLHRHLIEHLNAEIVLHTITDVNIALEWI
RSTLLYIRALKNPSHYGFASGLNKDGIEAKLQELCLKNLHDLSSLDLIRMDEDVNFKPTE
AGRLMAWYYITFETVKKFCTISGKETLLDLVTMISSCKEFVDVQLRINEKKILNTLNKDP
NRVTIRFPMEGRIKTREMKINCLIQAQLGCIPIQDFALTQDISKIFRNGSRITRWLSDFV
AVQEKFAILLNSLILAKCFRCKLWENSLHVSKQLEKIGITLSNAMVNAGLTSFKKIEETD
ARELELILNRHPPFGTQIKETVMYLPKYEVEVEQIARYSDTMAEILVTIILRNFEQLQAR
RTSPDSHYVTLIIGDADNQLVFKHKIMDSVLLKAGNWTKKIDVRRAFKSEDLSINLISSE
YVGLDIQQKFTVFYLGPRRLGNQIIMQKKSETEISHSKHSNRSTIAGPNKDLGMTACRKP
GNRECNHHCKNKHTCGHDCCKTGVAQKSETKEPTISSYLSDLRNRNAVSSLPPVKRLKMQ
MNKSRSVDLKEFGFTPKPSVPSISRSECLNIPGLSVMEERDQRDFCVKVQQEPSEYEDKD
FSRWNYSATSNEKSPQTVLFNRHLNASGNQNLTDGDKSNSPSSEVLNVNFELGNEVWDDF
DDENLLEVTSFSASTEKTKTSGFGNTLSSSTRGSKLLLQEPKSKFQGEMTKSFVSSHGKP
DTYLSNSPVFEFDTSSLTKLPQQAGNTTIVHSQERKQQNLSPEIGKLCFTHSKKIPNSSH
FVKKVDFFIRNNECKEEIDFSRYHPDDEADEMKSFLGIFDDIF
NT seq
4452 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaatcaaatgactccttgttttctttggatactttgttttttgaaaaaccagat
gaagctgaaaactatccagacaatgaaaaattattggattggtttctcccacctgttcca
ttgatttcagaaattccagatactcaggcattagaggaggaaatagaaagtcataaactg
ttaggtcaggaagaaaggccaaaaatgttaccatcaaatttaaagatgactaatgaaaac
acaaattatatttcaccaacacaaaaattccaatttgccttttcctcaaataaatgtgaa
acaggtgatctgaatttaacagaagcaggtaaccatgacttaccacgtgttcctgggaag
ctgacctatggttctcagaaatacaaaaatcacattggcaccgagatagcacctgagaaa
aatgtttcaggtaatacaaaattagtaaattttgcagaagataaaggagagagcacatca
gccttccgaaaaagattatttaaaatatctgacaatatacatgagggtgtttattctaat
gacagtacaaacttggagtcttctgttggctcagtgaaaattgtcccaacagaaatgaac
aaaggggaatcatggaaatgtagcaatagtaagcagaaacatcaatattcagacattaat
atgtttacagcaagcaatgctgtttcagcttctgaaatcagagaagacatattcaaagga
ccaactttttcagttgcatcccaacctcatgaagttcaaggggtaacagaaaatgattta
gattctttgaaggctgtcacagaaatccctgcaaaatttagaagtattttcaaagaattc
ccatatttcaactatatacagtccaaagcttttgatgatcttctttacacagataggaat
tttgtgatttgtgctccaactggttctgggaaaactgtggtgtttgaactagctataaca
agattgttaatggaagtaccattgccatggtcaaacataaaaattgtttatatggcacca
ataaaagccctgtgtagtcagcgtttcgatgattggaaagaaaaatttggaccaatagga
ttgaattgtaaagaactcactggagatacagtaatggatgacctatttgagatccaacat
gcccatattattatgacaactcccgaaaaatgggatagcatgactaggaaatggagagac
aactctttggtccagctggttagactctttctcattgatgaggtacatgttgtaaaagat
gaaaatcggggaccaactcttgaagttgtagtcagcagaatgaaaactgtacagtcttta
tctcctccttcagaaaatagtacagttattccaatgagatttgtagctgtgtctgcaacg
attccaaatgctgaggatattgcagaatggctttcagatggtgaaagacctgcagtatgt
ttgaaaatggatgagaaacataggccagtgaaacttcagaaagtggtccttggattcccc
tgcggaagtaaccaaactgaatttaagtttgatttaaccctcaactacaaaattgctggt
gttatacgaacatactctgatcagaaacccacacttgtgttttgtgcaacaaggaaaggt
gtgcaacaggctgcttctgttctagtgaaagatgccaaatttattatggctgtggaacag
aaacagaggttacagaagtatgcatattccataagagattcaaaactgagagatatctta
atacatggtgttgcttatcatcatgctggtatggagctgtcagatagaaaagtagttgaa
ggagctttcactgttggagatctaccagttctttttactaccagtactttagctatggga
gtaaatttgcctgctcacctagtagttataaaatctacaatgcattatgctggaggaatg
tttgaagaatatagtgaaacagatattctacagatgattggtagagctggtcgacctcaa
tttgatactacagctactgcagttattatgactcggttaagtacaaaagagaagtatatt
cagatgttagcttgtagtgacactgtagaaagcagtttacacagacatcttatcgaacat
ttaaatgcagagatagtgttacataccatcacagatgtgaatattgctttggaatggata
cgatcaactttgctttatatcagagccttgaaaaatccatctcattatggttttgcatct
ggattgaacaaagatggaattgaagcaaaattacaagaattatgtttgaagaatctgcat
gatttatcatctctggacttgataaggatggatgaagatgttaatttcaaacctactgag
gcaggaagattgatggcttggtattacattacatttgagacagtgaagaaattttgtact
atcagtggaaaagagactttattagatctggtcacgatgatatccagctgcaaggaattt
gtagatgtgcagttaaggataaatgaaaagaaaatattgaatactttgaacaaagatcca
aatagagtaactatcagatttccaatggaaggaagaattaaaacaagagaaatgaaaata
aattgtcttatacaggctcaactaggatgcattcccatacaagactttgctttgacacaa
gatatctcgaagatttttagaaatggctcacgaattacaagatggttgtcagattttgtg
gctgttcaagaaaagtttgctatattattgaacagtttgattttagctaaatgttttaga
tgcaaactttgggaaaactctctacatgtatccaaacagctggaaaaaataggtataaca
ttgtcaaatgcaatggtaaatgcaggtttgacttcctttaaaaaaatagaagaaacagat
gcaagggaacttgaactgattttaaatagacaccccccttttggaacgcaaataaaagaa
acagtgatgtatctaccaaaatatgaagttgaagtggaacagattgcaagatacagtgat
accatggcagaaatattagtgacaattatattaagaaactttgaacagctacaagctaga
agaacatcaccagattctcactatgttaccttaatcataggtgatgcagataaccagctg
gtttttaagcacaaaattatggattctgttttattaaaagctggaaattggactaaaaag
attgatgtgaggagagcttttaaatctgaagatcttagcataaatctaattagttctgag
tatgttggacttgatattcagcagaaatttacagtcttttacttaggacccaggaggctt
ggaaatcaaataattatgcaaaaaaaatcagaaacagagatttcccattctaaacattca
aatagatctactatagcaggacccaataaagatttaggaatgactgcttgcagaaaacct
gggaaccgagaatgtaatcatcactgtaaaaataaacacacatgtggacatgactgctgt
aaaactggagtggcacaaaagtcagaaacaaaagagccaacaatctcttcatatttatct
gatttaagaaacaggaatgctgtttcatcacttcctccagttaaacgtctcaagatgcaa
atgaataaatctcgaagtgtggaccttaaagaatttggttttactccaaaaccttctgtt
cccagtatatcaaggtcagagtgtttaaacatacctggattgtctgtaatggaggagagg
gatcagcgtgatttctgtgtaaaagttcaacaagaaccgtctgaatatgaagacaaagat
ttctctagatggaactattctgcaacttcaaatgagaaatcccctcaaacagtgctgttc
aacagacatcttaatgcatctggaaaccaaaatttgacagatggggataaaagtaattct
ccatcctcagaagttttgaatgtgaactttgaattgggaaatgaagtttgggatgatttt
gatgatgagaacttattagaagttactagtttttcagccagtactgagaagacaaaaaca
tcaggatttggaaacactttgagttcaagtaccaggggaagtaagctattgctccaagag
ccaaagagcaaattccaaggagaaatgacaaaaagttttgtttcatcacatgggaagcca
gatacttatttatcaaattctcctgtattcgagtttgatacatcctccctgacgaaatta
cctcaacaagctggaaatacaactattgtccattcacaagaaagaaaacaacaaaatctg
tcaccagagattggaaagctatgctttactcactctaaaaaaataccaaattcttcacat
tttgttaagaaagtggatttctttattagaaacaatgaatgtaaagaggaaattgatttc
agtaggtatcatcctgatgatgaagctgatgaaatgaagtctttcctgggaatatttgat
gacattttctaa
DBGET
integrated database retrieval system
