Canis lupus familiaris (dog): 480479
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Entry
480479 CDS
T01007
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
cfa
Canis lupus familiaris (dog)
Pathway
cfa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
480479 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cfa03041
]
480479 (DDX42)
Enzymes [BR:
cfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
480479 (DDX42)
Spliceosome [BR:
cfa03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
480479 (DDX42)
Complex B
480479 (DDX42)
Complex C
U2 SnRNP specific factors
480479 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
480479
NCBI-ProteinID:
XP_013971877
Ensembl:
ENSCAFG00000012818
VGNC:
39858
UniProt:
A0A8C0SWV4
A0A8I3PHX0
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All DBs
Position
9:12696959..12734219
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AA seq
934 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATSSSSGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPADSDSDDDPLEAFM
AEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV
ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQ
KAGSSAAGASGWTSAGSLNSVPTNSAQQGHSSPDSPIASAAKGIPGFGNTASLSSAPVTY
PSAGAQGVNNTASGNNNREGPGGGNGKRERYTENRGGSRHGHGESGNRHGDSPRHGDGGR
HGDGYRYPESSSRHADGHRHGENRHGGGGSRHAESRGANDGRNGESRKESCNRESKVDPK
VDSKMDKMDSKTDKTADGFAVPEPPKRKKSRWDS
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaataaaggtggccctggcaccaagaggggatttggctttggaggttttgcc
attagtgctggaaagaaggaggaacccaagctcccacaacagtcccacagtgcctttggg
gcaaccagctcttcatccggttttggaaagtcagctccaccacagctcccttctttctac
aaaattggatctaaacgggccaactttgatgaagaaaatgcctattttgaagatgaggaa
gaagactctagcaatgttgatttgccttatattcctgctgaaaactcacctacccgccaa
cagttccattccaagccagcagattctgatagcgatgacgatcccttggaggcattcatg
gctgaagtggaggatcaggcagctagagacatgaagaggcttgaagaaaaggacaaggaa
agaaaaaacgtaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgatacatggcagagaacccaactgctggtgtggttcaggaggaagaagaagataat
ttggaatatgatagtgatggaaatccaattgcaccttccaaaaaaatcattgatcctctt
cctccaattgatcattcagagattgactatccaccatttgaaaaaaatttttacaatgag
catgaagagataaccaacctcacccctcagcagctaatagatctccgtcataagcttaat
cttcgggtctctggtgccgcacctcctagaccaggaagtagttttgctcattttgggttt
gatgaacaacttatgcaccagattcggaaatctgagtacacacagcccactccaatacag
tgccagggtgtgcctgtggcattaagtggtagagacatgattggtattgccaaaacaggc
agtggaaaaactgcagcctttatctggcccatgttgattcatataatggaccagaaggaa
ttggaaccaggtgatggaccaattgcagtgattgtatgtcctactagggaactttgccag
cagatccatgcagaatgtaagcggtttgggaaagcatataatcttcgatcagttgctgtg
tatggaggagggagcatgtgggaacaggccaaggcccttcaggagggagcagaaattgtt
gtgtgtaccccaggtcgactaattgatcatgtgaagaagaaagctaccaatcttcaaaga
gtctcttaccttgtgtttgatgaagcagatcgcatgtttgacatgggatttgagtaccag
gtgcgatccatagcaagtcatgtccgtcctgacagacagactcttttattcagtgcaact
tttcggaaaaagattgaaaaactagccagagacatcttgatcgaccctattcgtgtggtg
cagggagacattggagaggcaaatgaagatgtaacacagattgtggaaattctccattct
gggcctagtaaatggaactggctcactcggcgtctggtggaatttacctcttcaggaagt
gtcctcctgtttgttactaaaaaagccaatgctgaggagctagccaataaccttaagcag
gagggtcataatcttgggctgcttcatggggatatggatcagagcgaaagaaacaaggtc
atttcagattttaagaaaaaggacatcccagtcctggtggccacagatgttgcagcccgt
ggtctggacattccttcaattaagactgtcattaactatgatgtggcacgagatattgat
actcatactcataggattggccgcacgggacgagcgggtgagaaaggtgtggcctatacc
ttactgacccccaaggacagcaattttgctggtgaccttgtccggaacttggaaggagcc
aatcagcatgtttccaaggaactcctagatctggcaatgcagaatgcctggtttcggaaa
tcccgctttaaaggaggaaaaggcaaaaagctgaacattggtggaggtggcctaggctat
agggagcgccctggcctaggctcggagaacacggaccgaggaaataacaacaatgtgatg
agtaattatgaggcctataagccttccacaggagccatgggagatcggctgacggcaatg
aaagcagctttccagtcacagtacaagagtcactttgttgcagccagcttaagcaaccag
aaggctggaagctctgctgctggggcaagtggatggacgagtgcagggagcttgaattcc
gttccaactaattcagcccaacagggccatagcagtccagacagccctattgctagtgcc
gccaaaggcatcccaggctttggcaatactgcgagcctcagcagtgctccggtgacctac
ccttctgctggagcccagggagtcaacaatacagcttcagggaataacaaccgcgaaggc
cctgggggaggcaatgggaagagagagcgatatactgagaaccggggtggcagccgtcat
ggtcatggagagagtggcaatcggcatggcgacagtccacgccacggagatggtggtcgc
catggagatggataccgctacccggaaagtagcagccgtcatgctgatggtcaccgtcat
ggagagaataggcatggaggaggtggaagccgacatgcagagagccgaggtgcaaacgat
ggtcggaatggtgaaagcaggaaagagagttgtaatcgtgagagcaaggtggaccccaag
gtggacagcaagatggacaagatggacagcaagacagataagacagctgatggttttgct
gtccctgagccacccaagcgcaagaaaagtcgatgggacagttag
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