Canis lupus familiaris (dog): 481107
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Entry
481107 CDS
T01007
Symbol
SMARCC2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X3
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
cfa
Canis lupus familiaris (dog)
Pathway
cfa03082
ATP-dependent chromatin remodeling
cfa04714
Thermogenesis
cfa05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
481107 (SMARCC2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
481107 (SMARCC2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
481107 (SMARCC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfa03021
]
481107 (SMARCC2)
03036 Chromosome and associated proteins [BR:
cfa03036
]
481107 (SMARCC2)
Transcription machinery [BR:
cfa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
481107 (SMARCC2)
Chromosome and associated proteins [BR:
cfa03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
481107 (SMARCC2)
PBAF complex
481107 (SMARCC2)
GBAF(ncBAF) complex
481107 (SMARCC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
CD99L2
Motif
Other DBs
NCBI-GeneID:
481107
NCBI-ProteinID:
XP_005625549
Ensembl:
ENSCAFG00000000109
VGNC:
46536
LinkDB
All DBs
Position
10:complement(545013..566990)
Genome browser
AA seq
1237 aa
AA seq
DB search
MEPPAAGLAPLGSGAPGPGRCCLSPRPRLQYIQAEPPTNKSLSSLVVQLLQFQEEVFGKH
VSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRNVEMFMTI
EKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIIKRHQGTVTEDKNNASHVVYPVPGNLEE
EEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAKWILDTDT
FNEWMNEEDYEVNDDKSPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRKRSPSPSP
TPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKTVNTKKDS
ESAPVKGGTMTDLDEQEDESMETTGKDEDENSMGNKGEQTKNPDLHEDNVTEQTHHIIIP
SYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACR
RNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSGLVPLQPK
TPQGRQVDADTKAGRKGKELDDLVPETAKGKPELQTSASQQMLNFPDKGKEKPADMQNFG
LRTDMYTRKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECI
LHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAAKSA
LEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPERIEESGT
DEARAEGQATEEKKEPKEPREGGGATEEETKEKTSEVPKKDEERGKQGDSEKESEKSDGD
PIVDPDKEKEPKEGQEEVLKDMVESEGERKTKVERDIGEGNLSTAAAAALAAAAVKAKHL
AAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLADRQAFHM
EQLKYAEMRARQQHFQQMHQQQQQPPPALPPGSQPVPPTGTAGPPTVHSLAMAPASVAPA
PAGSGAPPGSLGPSEQIGQAGSAVGPQQQQPAGAPQPGAVPPGVPPPGPHGPSPFPNQQT
PPAMMPGAVPGSGHPGVAGNAPLGLPFGMPPPPPPAPSIIPFGSLADSISINLPPPPNLH
GHHHHLPFAPGTLPPPNLPVSMANPLHPNLPATTTMPSSLPLGPGLGSAAAQSPAIVAAV
QGNLLPSASPLPDPGTPLPPDPTAPSPGTVTPVPPPQ
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atggagcccccggccgctggcctcgcaccgctcgggtccggggcgccgggcccaggacgc
tgctgcctcagcccccgtccgcgcctgcagtatatacaagctgaaccacctaccaacaag
tccttgtctagcctggttgtacagttgctacagtttcaggaagaagtttttggcaaacat
gtcagcaatgcgccgctcactaaactgccgatcaaatgtttcctagatttcaaagcagga
ggctccctgtgccacatacttgcagctgcctacaaattcaagagtgaccagggatggcgg
cgttacgatttccagaatccatcacgcatggaccgcaacgtggaaatgttcatgaccatt
gagaagtccttggtgcagaataactgcctgtctcgacctaacatttttctctgcccggaa
attgaacccaaactgctagggaaattaaaggacattatcaagagacaccagggaacagtc
actgaggataagaacaatgcctcccatgttgtgtatcctgtcccagggaacctggaagaa
gaggaatgggtacgaccggtcatgaagcgggataagcaggttcttctgcactggggctac
taccctgacagttatgacacgtggatcccagccagtgaaattgaagcatctgtggaagat
gctccaactcctgagaaacctaggaaggttcatgcaaagtggattctggacacagacact
ttcaatgaatggatgaatgaggaagactatgaagtaaatgatgataaaagccctgtctcc
cgccgaaagaagatttcagccaagactctgacggatgaggtgaacagcccagattcagat
cgacgggacaagaaggggggcaactataaaaagaggaagcgctccccctctccttcacca
accccagaagctaagaagaaaaatgccaagaaaggtccctcaacaccttacaccaagtca
aagcgtgggcacagagaggaggagcaagaagacctgacaaaggacatggatgagccttca
ccagtccccaatgtagaggaggtgacgttacctaagacagtcaacactaagaaggattca
gagtctgccccggtcaaaggaggcaccatgactgacctggatgaacaggaggatgaaagc
atggagaccacgggcaaggatgaggatgaaaacagtatggggaataagggggagcagacg
aagaatccggacctgcacgaggacaacgtgactgagcagacccaccacatcatcattccc
agctacgctgcctggtttgactataatagtgttcatgccattgagcggagggctctcccc
gagttctttaacggcaagaacaagtccaagaccccggaaatctacctggcttatagaaac
ttcatgattgacacttaccggctgaacccccaagagtatctcacctccactgcctgccgt
aggaacctggctggtgatgtctgtgccatcatgagggtccatgctttcctagagcagtgg
ggtctcattaactaccaggtggatgccgagagtcgaccgaccccgatggggcctccgccc
acctctcatttccatgtcttggcagacacaccatcggggctggtgcctctgcagcccaag
accccgcagggccgccaggttgatgctgataccaaggctgggcgaaagggcaaagagctg
gatgacctggtgccagagacggctaagggcaagccagagctgcagacctctgcttcccag
caaatgctcaacttccctgacaaaggcaaagagaagccagcagacatgcagaacttcggg
ctgcgcacagacatgtacacaaggaagaacgtcccctccaagagcaaagctgcagccagt
gccactagagagtggacggagcaagagaccctgctactcctggaggcactggaaatgtac
aaagatgactggaacaaagtgtcagaacacgtgggaagccgcacgcaggatgagtgcatc
ttgcattttcttcgtcttcccattgaagacccgtacctggaggactcggaggcctccctg
ggccccctggcctaccagcctatccccttcagtcagtcaggcaaccctgttatgagcact
gttgccttcctggcctctgtcgtcgatcctcgagtcgcctctgctgctgcgaagtcggcc
ctagaagagttctccaagatgaaggaagaagtacccacagccttggtagaggcccatgtt
cggaaagtggaagaagccgccaaagtgacgggcaaggccgacccagccttcggtctggag
agcagtgggatcgcggggaccacctccgatgagcccgagcggatcgaggagagcgggact
gatgaggcacgggcggagggccaggccacagaggagaagaaggagcccaaggaaccccga
gaaggaggtggggctactgaagaagaaacaaaggagaagaccagcgaggtccccaagaag
gatgaagagagagggaaacaaggcgacagtgagaaggagtcagagaagagtgatggggac
cccatagttgaccccgacaaggagaaggaaccaaaggaagggcaggaggaagtgctgaag
gacatggtggagtcagagggggagaggaagacgaaggtggagcgggacatcggcgagggc
aacctctctactgccgccgccgccgccctggccgccgccgcagtgaaggccaagcacctg
gccgctgtggaggagaggaagatcaaatcgctggtggccctgctggtggagacccagatg
aaaaagttggagatcaaactccggcactttgaagagttggagacgatcatggaccgggag
cgagaggcactggagtatcagaggcagcagctcctggcagatagacaagccttccacatg
gagcagctgaagtatgccgagatgagggcccggcagcagcacttccagcaaatgcaccaa
cagcagcagcagccaccgccagctctgcccccgggctcccagcctgtcccacccaccggc
actgctgggccgcccacggttcacagcctggccatggctccggcctccgtggcccccgct
cctgctggcagtggggccccccccggaagcttgggcccctctgaacagattgggcaggca
gggtcagccgtggggccacagcagcagcaaccagctggagccccccagcctggggcagtc
ccaccaggggttcccccccctggaccccatggcccctcaccgttccccaaccaacaaact
cctcccgcaatgatgccaggggcagtgccaggcagcgggcacccaggcgtggcgggtaat
gctcctttgggtttgccttttggcatgccgcctcctcctcctcctgctccatccatcatc
ccatttggtagtctagccgactccatcagtattaacctgccccctcctcctaacctgcat
gggcatcaccaccatctcccgtttgccccgggcactctccccccacctaacctgcctgtg
tccatggcgaaccctctacatcctaacctgccggcgaccaccaccatgccatcttccttg
cctctcgggccggggctcggatccgccgcagcccagagccctgccattgtggcagctgtt
cagggcaacctcctgcccagtgccagcccactgccagacccaggtacccctctgcctcca
gaccccacggccccgagcccaggcacagtcacccctgtgccacctccacagtga
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