Canis lupus familiaris (dog): 482986
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Entry
482986 CDS
T01007
Symbol
SDC1
Name
(RefSeq) syndecan-1 isoform X1
KO
K06257
syndecan 1
Organism
cfa
Canis lupus familiaris (dog)
Pathway
cfa04512
ECM-receptor interaction
cfa04514
Cell adhesion molecules
cfa04820
Cytoskeleton in muscle cells
cfa05144
Malaria
cfa05205
Proteoglycans in cancer
cfa05418
Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
482986 (SDC1)
04514 Cell adhesion molecules
482986 (SDC1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
482986 (SDC1)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
482986 (SDC1)
09174 Infectious disease: parasitic
05144 Malaria
482986 (SDC1)
09166 Cardiovascular disease
05418 Fluid shear stress and atherosclerosis
482986 (SDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cfa04131
]
482986 (SDC1)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
cfa04090
]
482986 (SDC1)
00535 Proteoglycans [BR:
cfa00535
]
482986 (SDC1)
Membrane trafficking [BR:
cfa04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
482986 (SDC1)
CD molecules [BR:
cfa04090
]
Proteins
482986 (SDC1)
Proteoglycans [BR:
cfa00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
482986 (SDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
Romo1
Glycophorin_A
Motif
Other DBs
NCBI-GeneID:
482986
NCBI-ProteinID:
XP_022260187
Ensembl:
ENSCAFG00000003833
VGNC:
45942
LinkDB
All DBs
Position
17:complement(15185971..15208368)
Genome browser
AA seq
317 aa
AA seq
DB search
MGNAAAKGYFKAQCGCCPAPWPCPGIPQMQIVATNVPPEDQDGSGDDSDNFSGSGAGALQ
DITLSQQTPSTWKDMALLTAMPTAQEPTGADDIDSSTSILLTREGPEGGEAVLVAEAEPG
FTDREKETAHPPSETTPHPTTHRASTARATTAQGPATLHPHRDAQPDHHQISVLAEPSQL
DPHTPRVEDGGPSATERAAEDGVSTQLPAGEGSGEQDFTFDVSGENTAGTAVEPDQRNQP
PVDRGATGASQGLLDRKEVLGGVIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQ
ANGGAYQKPSKQEEFYA
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atgggaaatgctgctgcaaagggctactttaaagctcagtgcggatgctgccctgcaccc
tggccctgccctggaatcccccagatgcaaattgtggccacaaatgtgccccccgaagac
caagatggctctggggatgactctgacaacttttctggctccggtgcaggtgctctgcag
gacatcaccttgtcacagcagaccccgtccacctggaaggacatggcacttctgacggcc
atgcccacggctcaggagcccaccggcgcggatgacatcgacagctccacgtccatcctg
ctgaccagagagggccccgaggggggagaggccgtgctcgtggcagaggcggagcctggc
ttcactgaccgggagaaggagaccgcccacccccccagcgagaccacgccgcaccccacc
actcacagggcttcgaccgccagagccaccacggcccagggccctgccaccctccatccc
cacagggacgcgcagcctgaccaccatcagatctcggttcttgcagaacccagccagctc
gaccctcacaccccgagagtggaggacggaggtccctctgccaccgagagggccgccgag
gacggagtctccactcagctcccggcgggagagggctccggggagcaggacttcaccttt
gacgtatctggggaaaacacggccgggacagctgtggagcctgaccagcggaatcaaccc
ccagtggaccgtggggccacgggggcctcacagggcctcctggacaggaaggaagtgctg
ggaggggtcatcgctggaggcctcgtggggctcatcttcgccgtgtgcctggtgggcttc
atgctgtaccggatgaagaagaaggacgagggcagctactccttggaggagcccaaacaa
gccaacggcggagcctaccagaagcccagcaagcaggaggagttctacgcctga
DBGET
integrated database retrieval system