Canis lupus familiaris (dog): 483340
Help
Entry
483340 CDS
T01007
Symbol
TNRC6C
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein isoform X2
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
cfa
Canis lupus familiaris (dog)
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfa03019
]
483340 (TNRC6C)
03036 Chromosome and associated proteins [BR:
cfa03036
]
483340 (TNRC6C)
Messenger RNA biogenesis [BR:
cfa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
483340 (TNRC6C)
Chromosome and associated proteins [BR:
cfa03036
]
Eukaryotic type
Gene silencing
piRNA pathway
483340 (TNRC6C)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA_7
UBA
RRM_1
RRM_occluded
UBA_NBR1_C
THOC7
Motif
Other DBs
NCBI-GeneID:
483340
NCBI-ProteinID:
XP_005624105
Ensembl:
ENSCAFG00000005224
VGNC:
47700
LinkDB
All DBs
Position
9:complement(3701674..3805806)
Genome browser
AA seq
1723 aa
AA seq
DB search
MATGSAQGTFTGHTKKTNGNNGTNGALVQSPSNQSALGAGGASGNGNGARVWGVATGSSS
GPTHCSLGAGDGKMDNMIGDGRSQSCWGASNSNTGINLNLNPNANPAAWPVLGHEGTVAT
GNPSSICSPVSAIGQNTGNQNGNPTGTLGAWGNLLPQESTEPQTSTSQNVSFSVQPQNLN
TDGPNNTNPMNSSPNPVNAMQTNGLPNWGMAVGMGAIIPPHLQGLPGANGSSVSQVSGSG
GEGISSSVWGLSPGNPAIGSSNSGFNQGNGDTVNSALSAKQNGSSSAVQKEGSGGNAWDS
GPPAGPGLLAWGRGSGSNSSVSHIHSGAWGHPSRSTSNGVNGEWGKPPNQHSNSDINGKG
STGWDSPSVSSQNPAVQPGGEHMNSWAKAASSGTTASEGSSDGSGSHNEGSSGREGAEGR
RRDKGMIDQGHIQLPRNDLDPRVLSNTGWGQTPVKQNTAWEFEESPRSERKNDNGTEAWG
CAATQPSNSGGKSDGSIVNSTNTSSVSGWASAPPAAGPANTGWGDSSNKAPNGPGVWGDS
ISSTAVNNAAAASKSGHAWSGTVNQEDKSPTWGEPQKPKSQNWGDGQKSNPAWSAGGGDW
TDSSSVLGHLGDGKKNGSGWDADSNRSGSGWNDATRSGTSGWGNGTNAKVNPGTNWGESL
KPGPQQNWAGKPQDNNVSNWGGAASVKQTGTGWIGGPVPVKQKDSSEATGWEEPSPPSIR
RKMEIDDGTSAWGDPSNYNNKTVNMWDRNNPGLQSSTTAAATTTTTTTSSSTDLVETPPP
HQASTQLNRSPLLGPVSAGWGEMPNVHSKAESSWGEPSSPSALVDNGTAAWGKPPSSGSG
WGDQPTEPPVTFGRASAPTAAPALCKPASKSMQEGWGSGGDDMNLGTSQWEDEEGGMWNN
AASQESTSSCSSWGNAPKKGLPKGMKTSGKQDEAWIMNRLIKQLTDMGFPREPAEEALKS
NNMNLDQAMSALLEKKVDVDKRGLGVTDYNGVVTKALGCRPPVSKDSSGDRPTFLDKDGG
LVEEPTTSPFLPSPSLKLPLSNSALPNQALGGIASGLGMQNLNSSRQIPSGNLGMFGSSG
AAQARTMQQPPQPPVQPLSSSQPSLRAQVPPFLSPQVQAQLLQFAAKNIGLNPALLTSPI
NPQHMTMLNQLYQLQLAYQRLQIQQQMLQAQRNVSGPMRQQEQQVARTITNLQQQIQQHQ
RQLAQALLMKPPPPPPHLSLHPSAGKSSMDSFPPHPQAPGLPDLQTKEPQSSPSTFAPYP
LAGLNPNMNVNSMDMTGGLSVKDPSQSQSRLPQWTHPNPMDNLPGAASPLDQNPSKHGAI
PGGLSIGPPAKSSIDDSYGRYDLIQNSESPASPPVAVPHSWSRAKSDSDKISNGSSINWP
PEFHPGVPWKGLQNIDPENDPDVTPGSVPTGPTINTTIQDVNRYLLKSGGSSPPSSQSAA
LPSSSAWPLSASGYGRSFSSIAPAPSIAGKLSDMKSTWSSGPASHTQASLSHELWKVPRN
TTAPTRPPPGLSNPKPSSTWGASPLGWTSSYSSGSAWSTDTSGRTSSWLVLRNLTPQIDG
STLRTLCLQHGPLVTFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEE
EVNRFLAQGQALPPTSSWQSSTGTGQTRLGASGGSHGLVRSDPGHWSAPCLAGKGSSDLL
WGGVPQYSSSLWGPPSSDDGRVIGSPTPLNTLLPGDLLSGESI
NT seq
5172 nt
NT seq
+upstream
nt +downstream
nt
atggctacagggagtgcccagggcaccttcactggacataccaagaagacaaatggcaat
aatggcaccaatggtgcactcgtccaaagcccttctaatcagagtgcccttggagcaggg
ggcgccagcggtaatggcaatggagccagagtgtggggcgtagccacaggctccagctcc
ggccccactcactgctctctcggtgccggggatggaaaaatggacaacatgattggagat
gggagaagtcagagttgctggggtgcttccaactccaatactggcattaatcttaacctt
aaccccaatgccaacccagctgcctggcctgtacttggacacgaaggaactgtggcaaca
ggcaacccttccagtatttgtagtccggtcagtgccataggtcaaaatacgggcaaccag
aatgggaacccaacaggcactttaggtgcttggggaaacttgctgccgcaagagagcaca
gaaccacaaacgtccacttctcagaatgtgtctttcagcgtacaacctcagaaccttaac
actgatggaccaaataacactaaccccatgaactcttcaccaaaccctgtcaatgcaatg
cagacaaacggactgccaaactggggcatggctgttggtatgggggccatcatcccgccc
cacctgcagggccttcctggtgctaatggatcatcagtttctcaagtcagtgggagcggt
ggtgaaggaatcagcagctctgtgtggggactgtccccaggtaaccctgccataggaagt
agcaattctgggttcaatcaggggaatggagacactgtgaactcagcattgagtgctaaa
caaaatggatccagcagtgctgtgcagaaggaaggaagtggaggaaatgcctgggactct
ggccctcctgctggtcccggactccttgcctggggacggggcagtggcagcaacagcagc
gttagtcatatccattcgggggcttggggccaccccagccggagcacctctaacggtgtg
aatggggaatggggcaagcccccaaaccagcattccaacagtgacatcaatgggaaagga
tcaacagggtgggacagtccgagtgttagcagccagaatcctgccgtgcagcctggtggc
gaacacatgaactcttgggccaaagctgcatcttctggaacaacagcgagtgagggaagt
agcgacggttctggcagtcacaacgaaggaagctccgggagggaaggagcagaaggccga
aggcgagataaagggatgatagaccaggggcacatccaattgccaaggaacgatcttgac
ccaagagttctgtctaatactggttggggacagactccagtaaaacaaaacactgcctgg
gaatttgaagagtcccctaggtctgagagaaaaaatgacaatgggacagaggcctggggc
tgtgccgctactcagccttcaaactcaggggggaagagtgatgggtccatcgtgaacagt
acaaatacctcttcagtgtccgggtgggccagcgcaccgcccgctgctgggccagcaaac
acaggctggggagacagcagcaacaaagcgccaaatggcccaggggtttggggggactcg
ataagctctactgctgttaataatgctgctgctgcctccaagagtggccatgcttggagt
gggaccgtaaatcaggaggataagtcgcccacctggggggagcctcagaaacccaaatct
cagaactggggagacggacaaaaatctaatccagcctggagtgcaggagggggagattgg
acagattcatcttctgtcctcggacacttgggggatgggaaaaaaaatggttctggatgg
gatgctgacagtaatcggtcagggtctggttggaatgatgccaccaggtctgggaccagt
ggctggggtaatggcacaaatgcaaaggtgaatccagggacaaactggggagagtcttta
aaacctggcccccaacagaactgggcaggtaaaccccaagacaacaatgtgagtaactgg
ggaggagccgcttccgttaaacagacaggaactgggtggattggggggccagtccctgtc
aaacaaaaggacagcagtgaggccacaggctgggaggaaccttctccaccatccattcga
cgcaaaatggaaattgatgatggtacctcagcttggggtgacccaagcaactacaacaat
aaaactgtaaacatgtgggatagaaacaatccaggcctgcagagcagcaccacggccgct
gccaccaccaccaccaccaccacgagcagcagcacagacctggtcgagacgccaccgcca
caccaggccagcacccagctgaatcggtcaccactgcttggtccagtctcagcgggctgg
ggagagatgcctaacgtccattcaaaggctgagagctcttggggagagccgtcctccccc
tctgccctggttgacaacggcaccgcagcatggggcaagccacccagcagcggtagcgga
tggggggaccagcccacggagccaccagtgacattcgggagagccagcgcccccaccgct
gccccagccctgtgcaaaccagcttcaaaatctatgcaagaaggctggggcagtggtggg
gacgacatgaacctcggtaccagtcagtgggaagacgaagaagggggcatgtggaacaat
gctgcttcccaagaaagcacctcctcctgcagttcctgggggaatgcccccaaaaaagga
ctcccaaagggcatgaaaacgtctggcaagcaggacgaggcctggatcatgaaccggctg
atcaaacaactcacagacatgggcttcccgagagagccagctgaagaggccttgaagagt
aacaatatgaatcttgaccaggccatgagcgccctgttggaaaagaaggtggacgtggac
aagcgtggactgggagtgaccgactacaatggagtggtcaccaaagcccttggctgccgc
ccaccagtctccaaagactcttccggggaccgccccacctttcttgacaaggacggcggc
ctagtggaagagcccacgacttcaccgtttttgccttcaccaagcctgaagctccccctt
tcaaacagtgcactccctaatcaggccctgggtgggattgcctcagggctgggcatgcaa
aacttgaattcttctagacagataccgagtggcaatctgggtatgttcggcagtagcgga
gcagcacaagccaggaccatgcaacagccgccgcagccccccgtgcagcctctgagctcc
tcccagcccagcctccgtgctcaagtgcctccgtttctatcccctcaggttcaagcacag
cttttgcagtttgcagcaaaaaacattggtctcaaccctgcactattgacctcgccaatc
aatcctcagcatatgacgatgttgaaccagctctatcagctgcagctggcataccaacgt
ttacaaatccagcagcagatgctacaggctcagcgtaatgtttccggacctatgagacaa
caggagcagcaagttgcgcgcacaatcactaacctgcagcagcagatccagcagcaccag
cgccagctggcccaggccctgctcatgaagccgccgccgcccccgccgcacctgtctctg
cacccctctgcaggcaaatcgtccatggacagcttccccccccacccccaggcccccggc
ctgcctgacctgcagaccaaagagccgcagtcttcacccagcacctttgctccttaccct
ctagctggactgaacccaaacatgaatgtcaacagcatggacatgactggtggtttgtcg
gtgaaggacccgtcccagtcccagtcacgtctccctcagtggacacaccccaacccgatg
gacaacttacccggtgctgcttctcccctcgatcagaaccccagcaagcatggtgctatc
cctggaggtctaagcattgggcctccagctaagtcctccatcgacgactcctatggccgg
tacgatttaatccagaacagtgagtcaccagccagtcctcctgtagctgttccccatagc
tggtcacgtgccaaatctgacagtgataaaatctccaatggctccagcatcaactggccc
ccagaattccatcctggagttccatggaaaggacttcagaatattgatcccgagaacgac
cccgacgtcactcctggaagcgtccccactgggcccaccattaataccaccatacaggac
gtcaaccgctacctcctcaagagtggagggtcctccccaccgtcatctcagagtgccgcg
ctgccttcctcgagtgcctggccgctcagtgcctccggctacggtcgctctttcagcagc
atcgcgcccgcgcccagcattgcaggtaaactgtcagacatgaaatcgacgtggtcctct
ggccctgcctcccacacgcaagcctctctatctcatgaactgtggaaggtgcccagaaac
actactgcacccacaaggccgcctccagggctaagcaatcccaagccttcctccacctgg
ggagccagccccctcggctggaccagctcctactcctcgggttccgcatggagcaccgac
acctcaggacggacaagcagctggctcgttctccgcaacctcacgccccagatcgatggc
tctaccctgcggacactgtgtttgcagcacgggcctctcgtcacattccacctgaacctg
actcaaggcaacgccgtggtccgctacagctccaaggaggaggccgccaaggcccagaag
tccctgcacatgtgtgttctgggaaacactaccatcttggccgagtttgccggcgaagaa
gaggtgaatcgtttcttagcccaaggccaagcactgccgcccacctccagctggcagtcc
agtaccgggaccggccagacgcggctgggcgcctcgggcggctcccacggtctggtgcgg
agcgaccctggccattggagcgccccatgtctggcaggcaaagggagcagcgacctgctg
tggggcggggtcccccagtactccagcagcctgtggggcccgcccagcagtgacgacggc
agggtgatcggaagccccaccccattgaacactctgctgcctggcgacctcctcagtggg
gaatccatctag
DBGET
integrated database retrieval system
