Canis lupus familiaris (dog): 483686
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Entry
483686 CDS
T01007
Symbol
IGHMBP2
Name
(RefSeq) DNA-binding protein SMUBP-2 isoform X7
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
cfa
Canis lupus familiaris (dog)
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cfa03009
]
483686 (IGHMBP2)
03012 Translation factors [BR:
cfa03012
]
483686 (IGHMBP2)
Enzymes [BR:
cfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
483686 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
483686 (IGHMBP2)
Ribosome biogenesis [BR:
cfa03009
]
Eukaryotic type
Other ribosome biogenesis factors
483686 (IGHMBP2)
Translation factors [BR:
cfa03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
483686 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
Viral_helicase1
DEAD
ResIII
nSTAND3
IstB_IS21
SLFN-g3_helicase
AAA_16
AAA_22
Helicase_RecD
UvrD-helicase
Flavi_DEAD
AAA_25
Zot
AAA
PhoH
DnaB_C
ABC_tran
NPHP3_N
UvrD_C_2
NTPase_1
AAA_33
Herpes_ori_bp
Motif
Other DBs
NCBI-GeneID:
483686
NCBI-ProteinID:
XP_038310334
Ensembl:
ENSCAFG00000010745
VGNC:
41910
LinkDB
All DBs
Position
18:complement(47670994..47697919)
Genome browser
AA seq
1008 aa
AA seq
DB search
MRRRSWQENISPKELQSRGVCLLKLQVSSQRTGLYGRLLVTLEPRRCTSAAVLPSNSFTS
GDIVGLYDEGNQLATGILTRITQRSVTVAFDASHDFQLSLDRDRERAYRLLKLANDITYK
RLKKALITLKKYHSGPASSLIEVLFGGSAPSPASNTEPPLFCNTSLDASQKEAVSFALSQ
KELAIIHGPPGTGKTTTVVEIILQAVRQGLKVLCCAPSNIAVDNLVERLARCKQKILRLG
HPARLLESIQQHSLDAVLARSDNAQIVADIRKDIDQAFVNNRQTQDRREKSSVWNEVKLL
RKELKEREEAAMLESLTSAAVVLATNTVCSQLLGRRQPATSVRLTVPIPPGASSDGPLKL
LPDTHFDVVVIDECAQALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLM
ERLAEEHGARVVRTLTVQYRMHQAIMRWASEALYHGQLTAHPSVAGHLLRDLPGVAATEE
TGIPLLLVDTAGCGLFELEDDDDQSKGNPGEVRLVSLHIQALVDAGVQASDIAVITPYNL
QVDLLRQSLAHRHPELEIKSVDGFQGREKEAVVLSFVRSNRKGEVGFLAEDRRINVAVTR
ARRHVAVVCDSRTVSNHAFLKTLVDHFTEHGEVRTAFEYLDDIIPENYSHESSQGHGQAG
AKPQSSAALSRKPPGSRPQEGAQEGAQEARAAAGLERKRRGGKPSGPEVPSQPSLNGGSP
EGAGSRDHADHFRAMIAEFVASEKTQLEFPPSLNSHDRMWVHQIAEEHGLRHDSTGTGKK
RFITVSKRAPPAPSAPSAPPAPPAPPPAAGVGSIAPVGPPAPSPTQTKPPLGEQSVQDPL
NLKALHLERLQREKSRQERPAMEGQQAPHSGPRTLPERKKKKEAKGHAAVDLPSEEDFDA
LVAAAVKADNTCGLAKCTASVVTLGQLCQHCGRRFCLSHHLPEIHGCGERARAHARQRIS
REGVLYAGSGTKDRSLDPAKRAQLQRKLDKKLDELTSQRKSKRKEKEK
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atgaggaggaggtcctggcaggaaaacatctccccaaaagaactccagagccgaggcgtc
tgtttgctgaagctgcaggtttccagccagcggactgggctgtacgggcggctgctggtc
accttagagcccaggagatgcacatctgctgcggtgcttcccagcaacagctttacttca
ggcgatatagtgggtctgtatgatgaaggcaatcagctggccacagggatcctgacgcgg
atcacacagagatcagtcacagtagcctttgatgcgtctcatgatttccagctgagcttg
gaccgggaccgggagcgggcctacagactgttaaaacttgccaatgacatcacttacaag
cgactgaaaaaggctctgataacactaaagaagtaccattctggccccgcgtcctcactc
atagaggtcctctttggcggatcagcccccagtcctgccagcaatacagagccgccgttg
ttctgcaacacctccctggacgcctcccagaaggaagcagtctcctttgcgctgtcccag
aaagaacttgccatcatccatgggcctcctggcaccgggaaaaccaccactgtggtcgag
atcattcttcaggctgtgagacagggcttaaaggttctgtgctgtgctccctctaacata
gctgtggacaatctggtagagcgcctggctcggtgtaagcagaagatcctgcgcctcggg
caccctgcccgcctcctggagtccattcagcagcattccctcgatgcggttttagcgcgg
agtgacaatgcccagattgttgcagacatcagaaaggacattgatcaggcctttgtgaac
aacaggcagacccaggatagaagagagaagagtagtgtttggaatgaagtcaagctgtta
aggaaagagctgaaggagagggaggaagccgcaatgctggagagcctcacgtcggcagcg
gtggtgctggcaacaaacacggtgtgttcacagctgctaggacgcagacagccagcaact
tctgtaaggctcacggttccaattccaccaggtgcctcttctgatggtcccctgaagtta
ctgcccgatacccactttgatgtggtggtcatcgacgagtgcgcgcaggctctggaagct
agctgctggatccccctgctgaaggccaggaagtgcatcctggctggagatcacaaacag
ctgccccccaccacggtctctcataaggctgccctggcggggctgtcactcagcctgatg
gagcgcctggccgaggagcatggcgcgcgtgtggtgcggacactgactgtgcagtaccgc
atgcaccaggccatcatgcggtgggcctcggaggccctgtaccatgggcagctcacagcc
cacccttccgtggctgggcaccttctgcgggacctcccgggagtggctgccacggaggaa
acaggcatccccctgctgctcgtggacacagccggctgcgggctgtttgaactcgaagac
gatgacgaccagtctaaggggaaccctggtgaagtgcgccttgtcagtctgcacatccag
gccctggtggacgctggtgtccaggcaagcgacatcgccgtcatcacaccatacaacctc
caggtggacctgctcagacagagccttgcccacaggcaccccgagcttgaaattaagtca
gttgatggcttccaaggccgagagaaggaggctgtggtactgtccttcgtcagatccaat
aggaaaggtgaggtgggcttccttgctgaggaccggagaatcaacgttgccgtcacccgt
gctcggcgccacgtggcagttgtttgcgattctcgcactgttagcaaccatgccttcttg
aagaccctggtggatcacttcacagagcatggggaggtgcgcaccgcctttgaatatctt
gatgacatcatccctgaaaactactcccacgagagttcccagggccacggacaagctggt
gcgaaaccccaaagctctgcggcattgtccaggaagcctcctgggagccggcctcaggag
ggggcccaggaaggggcccaggaggccagagcagctgctgggctggagcggaagaggcgg
ggtgggaagccctcgggccctgaggtcccttctcagcccagcctcaatggaggcagccca
gagggagcggggagcagagaccatgcagaccacttcagggccatgattgcggagtttgtg
gcgagtgagaaaactcagttggagtttcctccttccttgaactcacacgacaggatgtgg
gtccatcagatcgccgaagagcatggactgagacatgacagcactgggacggggaagaag
aggttcatcactgtgagcaagagagccccgcctgccccgtctgcaccgtctgcgccgcct
gccccacctgccccgccgcctgcagcaggggttggcagcatagcccctgtcggtccccca
gcccccagccccacacagaccaagccccctcttggggagcagagtgtccaggaccccctg
aatctaaaggccctgcacctggaaaggctgcagagagagaagagccggcaggagcggcca
gccatggaggggcagcaggccccgcactcagggccacgcacgctacctgagaggaagaag
aagaaagaggcaaaaggacacgcggctgtagatttgcccagcgaggaggactttgatgcc
ctggttgcagctgccgtgaaggcagataacacctgcggcctcgctaagtgcacagccagc
gtggtgaccctgggccagctctgccagcactgtggccgccggttctgcctcagccaccac
ctgcccgagatccatggctgtggggagagggctcgcgcccacgcccggcagagaatcagc
cgggaaggagtcctctatgccggcagtgggaccaaggacaggtccctggacccagccaag
agggcccagctccagaggaagctggataagaagctggatgaactgaccagccagaggaag
agtaaacggaaggagaaggaaaagtga
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