Canis lupus familiaris (dog): 484995
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Entry
484995 CDS
T01007
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cfa
Canis lupus familiaris (dog)
Pathway
cfa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
484995 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfa03019
]
484995 (XAB2)
03041 Spliceosome [BR:
cfa03041
]
484995 (XAB2)
Messenger RNA biogenesis [BR:
cfa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
484995 (XAB2)
Spliceosome [BR:
cfa03041
]
Complex B
Other components
Prp19-related factors
484995 (XAB2)
Complex C
484995 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_NPHP3
TPR_1
Motif
Other DBs
NCBI-GeneID:
484995
NCBI-ProteinID:
XP_542113
Ensembl:
ENSCAFG00000018297
VGNC:
48445
UniProt:
A0A8C0PGY5
A0A8I3Q207
LinkDB
All DBs
Position
20:complement(52196600..52210038)
Genome browser
AA seq
855 aa
AA seq
DB search
MVVMARLSRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLIGRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARIILEK
ATKVSFKQVDDLASVWCECGELELRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECRLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPSRAQSKILFVRSDASREELAELAQQANPEEIELGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgtctgtcccggcccgagcggccggacctagttttcgaagaagag
gacctcccctatgaggaggaaatcatgcggaaccagttctccgtcaagtgctggcttcgc
tacattgagttcaagcaaggtgccccgaagcccaggctcaatcagctgtatgagcgggca
ctgaagctgctgccctgcagctacaaactctggtaccggtacctaaaggcacgccgggca
caggtgaagcatcgctgtgtgactgaccccgcctatgaagatgtcaacaactgccacgag
agggcctttgtgttcatgcataagatgccacgtctgtggctagactattgccaattcctg
atggaccagggccgcgtcacacacacccgccgtacgtttgaccgtgccctccgggcgctg
cccattacacagcactctcgcatctggcccctgtacctgcgcttcctccgctcacaccca
ctgcctgagacggctgtgcggggctaccggcgctttctcaaactcagccctgagagtgca
gaggagtacatcgagtacctcaaatccagtgaccggctggacgaagctgcgcagcgcctg
gccaccgtggtgaatgatgagcgctttgtgtccaaggccggcaagtccaactaccagctg
tggcacgagctctgtgacctcatctcccagaacccagacaaggtgcagtcactcaacgtg
gatgccatcatccgtggaggcctcactcgcttcactgaccagctaggcaagctctggtgc
tcgctagctgactactacatccgcagtggccacttcgagaaggctcgagatgtgtatgag
gaggccatccggaccgtgatgaccgtgcgggacttcacccaggtgttcgacagctatgcc
cagtttgaggagagcatgattgcagccaagatggagacagcctcagaactggggcgtgag
gaggaagatgatgtggacctggagctgcgcctggcccgcttcgagcagctcattggccgg
cggcccctgctcctcaacagcgtcttgctacgccagaacccgcaccatgtacacgagtgg
cacaagcgcgtggccctgcaccaggggcgcccccgggagatcatcaacacatacacggag
gctgtgcagacggtggaccctttcaaggctacaggcaagccccacacactgtgggtcgca
tttgccaagttttatgaagacaatgggcagctggacgatgcccgcatcatcctggagaag
gccaccaaggtgagcttcaaacaggtggatgacctggccagcgtgtggtgtgagtgtggc
gagctggagctccggcacgaaaactacgatcaggccttgcggttgctgcggaaggccact
gcactgcccgcccgacgagccgagtacttcgatggctcggagcctgtgcaaaaccgtgtg
tacaagtcactgaaggtgtggtcgatgctcgccgacctggaggagagcctaggcaccttc
cagtccaccaaggctgtatacgaccgcatcctggacctacgcatcgccacaccccagatc
gtcatcaactatgccatgttcctggaggagcataagtactttgaggagagcttcaaggcg
tatgagcgtggcatctcattgttcaagtggcccaacgtgtctgacatctggagcacctac
ctgaccaaattcatcgcccgctatgggggccgcaagctggagcgagcacgggacctcttt
gaacaggcgctggacggctgccctcccaaatatgcaaagacattgtacctgctgtacgca
cagctggaggaggagtggggcttggcccggcacgccatggccgtgtatgagcgtgccacc
agagccgtggagcctgcgcagcagtatgacatgttcaacatctacatcaagcgtgcagcc
gagatctatggagttacccacacccgcggcatctaccagaaggccatcgaggtgctgtca
gacgagcacgcccgggagatgtgcttgcggttcgcggacatggagtgcaggcttggcgag
attgaccgtgcgcgtgccatctacagcttctgctcccagatctgcgaccccaggaccact
ggcgctttctggcaaacatggaaggacttcgaggtccggcacggcaacgaggacaccatc
cgggagatgctgcggatccgccgcagcgtgcaggccacatacaacactcaggtcaatttc
atggcctctcagatgctcaaggtgtcaggcagcgccacgggcaccgtgtcagacctggcc
cccgggcagagtggcatggatgacatgaagcttctggaacaacgggcagagcagctggcg
gctgaagctgagcgggatcagccctcacgggcccagagcaagatcctgtttgtgaggagc
gatgcctcccgggaggagctggctgagctggcgcagcaagccaaccccgaggagattgag
ctgggtgaggatgaggatgaggacgagatggacctggagcccaacgaggtgcggctggag
cagcagagtgtgccggccgccgtgttcgggagcctgaaagaggactga
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