Canis lupus familiaris (dog): 485097
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Entry
485097 CDS
T01007
Symbol
PTBP1
Name
(RefSeq) polypyrimidine tract-binding protein 1 isoform X3
KO
K13218
polypyrimidine tract-binding protein 1
Organism
cfa
Canis lupus familiaris (dog)
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfa03019
]
485097 (PTBP1)
03041 Spliceosome [BR:
cfa03041
]
485097 (PTBP1)
Messenger RNA biogenesis [BR:
cfa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
485097 (PTBP1)
Spliceosome [BR:
cfa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
485097 (PTBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
Nup35_RRM
Motif
Other DBs
NCBI-GeneID:
485097
NCBI-ProteinID:
XP_005633222
Ensembl:
ENSCAFG00000019693
VGNC:
54984
LinkDB
All DBs
Position
20:complement(57608475..57620432)
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AA seq
527 aa
AA seq
DB search
MSSNSASAANGNDSKKFKGDNRSAGVPSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLM
LKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAA
LQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTV
LKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNND
KSRDYTRPDLPSGDSQPSLDQTMAAAFGAPGIMSASPYAGAGFPPTFAIPQAAGLSVPNV
HGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDV
QRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSKHQNVQLPREGQEDQ
GLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKILFSSNGGIVKGF
KFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSKSTI
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaactcggcctctgcagcaaatgggaacgacagcaagaaattcaagggtgac
aacagaagtgcaggtgtgccctccagagtgatccacatccggaagctccctggggacgtc
acggagggcgaggtcatttccctgggactgcccttcgggaaggtcaccaacctcctgatg
ctgaaaggaaaaaatcaggccttcatcgagatgaacacagaggaggccgccaacaccatg
gtgaactattacacctccgtgacgcctgtgctgcgaggccagcccatctacatccagttc
tctaaccacaaggagctcaagacggacagctcgcccaaccaggcacgagcccaggcagcg
ctacaggccgtgaactccgtgcagtcaggaaacctggccctggctgcctcggctgccgcg
gtggatgctgggatggccatggctggccagagcccggtgctccggatcatcgtggagaac
ctcttctacccagtgactttggacgtgctccaccagatcttctccaagtttggcaccgtt
ttgaaaatcatcactttcaccaagaataaccagtttcaggcgctgctgcagtatgccgac
cctgtgagcgcccagcatgccaagctgtcgctggacggccagaacatctacaacgcctgc
tgcacgctccgcatcgacttctccaagctcaccagcctcaacgtcaagtacaacaacgac
aagagtcgtgactacacgcgcccagacctgccctctggcgacagccagccctcgctggac
cagaccatggctgctgccttcggtgcacctggtataatgtcagcctctccgtatgcagga
gctggtttccctcccacctttgcaattcctcaagctgcaggcctctccgttcctaacgtg
cacggggccctggctcctctagccatcccgtcggcggcagcggcggcagcagcggcaggc
cggatcgccatcccgggcctggcaggggcaggaaattctgtcctcctggtcagcaacctc
aaccccgagagagtcacaccccaaagcctctttattcttttcggcgtgtacggcgacgtg
cagcgggtgaagatcttgttcaataagaaggagaacgccctggtgcagatggccgacggg
agccaggctcagctggccatgagccacctgaacgggcacaagctgcacgggaagccggtg
cgcattacgctgtccaagcaccagaacgtgcagctgccccgcgagggccaggaggaccag
ggcctcaccaaggactacggcaattcacccctgcaccgcttcaagaagccgggctccaag
aacttccagaacatctttccaccctcggccaccctgcacctgtccaacatcccgccctct
gtgtccgaggatgacctcaagatcctcttctccagcaatggcgggatcgtcaagggcttc
aagttcttccagaaggaccgcaagatggccctgatccagatgggttcggtggaggaggcc
atccaggcgctcatcgacctgcacaaccacgacctgggcgagaaccaccacctgcgggtc
tccttctccaagtccaccatctag
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