Canis lupus familiaris (dog): 486407
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Entry
486407 CDS
T01007
Symbol
SMARCB1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X2
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
cfa
Canis lupus familiaris (dog)
Pathway
cfa03082
ATP-dependent chromatin remodeling
cfa03250
Viral life cycle - HIV-1
cfa04714
Thermogenesis
cfa05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
486407 (SMARCB1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
486407 (SMARCB1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
486407 (SMARCB1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
486407 (SMARCB1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cfa01009
]
486407 (SMARCB1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfa03021
]
486407 (SMARCB1)
03036 Chromosome and associated proteins [BR:
cfa03036
]
486407 (SMARCB1)
Protein phosphatases and associated proteins [BR:
cfa01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
486407 (SMARCB1)
Transcription machinery [BR:
cfa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
486407 (SMARCB1)
SWI/SNF complex
486407 (SMARCB1)
Chromosome and associated proteins [BR:
cfa03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
486407 (SMARCB1)
PBAF complex
486407 (SMARCB1)
SWI/SNF complex
486407 (SMARCB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
486407
NCBI-ProteinID:
XP_543533
Ensembl:
ENSCAFG00000014105
VGNC:
46534
LinkDB
All DBs
Position
26:complement(27765925..27802103)
Genome browser
AA seq
376 aa
AA seq
DB search
MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
KKIVASSHDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQKAKRNS
QWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQPEVLVPI
RLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQIESYP
TDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVT
TIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQD
RNTRRMRRLANTAPAW
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgatggcgttgagcaagaccttcgggcagaagcccgtcaaattccagctggag
gacgacggcgagttctacatgatcggctctgaggtgggaaactacctccgtatgttccga
ggttctctgtacaagagatacccctcgctctggaggcgactagccactgtggaagagagg
aagaaaatagttgcatcgtcacatgatcatggatacacaaccctggccaccagcgtgacg
ctgttaaaagcttcggaggtggaagagattctggacggcaatgacgagaagtacaaggcg
gtgtccatcagcacagagccccccacctacctcagggaacagaaagccaagaggaacagc
cagtgggtgcccaccctgcccaatagctcccaccatctggatgctgtgccctgctccacg
accatcaacaggaaccgcatgggccgggacaagaagagaaccttccctctgtgctttgat
gaccacgacccagctgtgatccatgaaaatgcatcccagcctgaggtgctggtccccatc
cggctggacatggagatcgatggccagaagctgcgagatgcctttacatggaacatgaat
gagaagctgatgactcctgagatgttttcagaaatcctctgtgatgatctggatttgaac
ccgctgacatttgtcccagccatcgcctctgccatcagacagcagatagagtcctacccc
acggacagcatcctggaggaccagtcagaccaacgtgtcattattaagctgaacatccac
gtggggaacatttcgctggtggaccagtttgagtgggacatgtcagagaaggagaactca
cccgagaaatttgccctgaagctgtgctcagagctggggctgggtggggagttcgtcacc
accattgcatacagcatccggggccagctgagctggcatcagaagacctacgccttcagt
gagaaccccctccccacggtggagattgccattcggaacacaggtgatgctgaccagtgg
tgtccactgctggagactctgacagatgctgagatggaaaagaagatccgcgaccaggac
aggaacacaaggcgtatgaggcgtcttgccaacactgccccagcctggtaa
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