Canis lupus familiaris (dog): 487130
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Entry
487130 CDS
T01007
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X3
KO
K14327
regulator of nonsense transcripts 2
Organism
cfa
Canis lupus familiaris (dog)
Pathway
cfa03013
Nucleocytoplasmic transport
cfa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
487130 (UPF2)
03015 mRNA surveillance pathway
487130 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfa03019
]
487130 (UPF2)
Messenger RNA biogenesis [BR:
cfa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
487130 (UPF2)
mRNA cycle factors
P-body specific factors
487130 (UPF2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
487130
NCBI-ProteinID:
XP_005617201
Ensembl:
ENSCAFG00000004839
VGNC:
48151
LinkDB
All DBs
Position
2
Genome browser
AA seq
1269 aa
AA seq
DB search
MPAERKKPASMEEKETLLNNKEKDCSERRPVSSREKPKDEIKLTAKKEVIKVPEDKKKKL
EEDKRKKEDKERKKKEEEKVKAEEELKKKEEEEKKKHEEEEKKKQEEQAKRQQEEEAAQL
KEKEESLQLHQEAWERHQLRKELRSKNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QVWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKSCQNKDSNKDDSKEAKEPKDNKEVSNPDDLELELENLEINDDALELEGGDEAE
DLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANR
KKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINIE
TKNKTVRFIGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESH
LRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYK
DLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDV
GIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGV
NSDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEV
WTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESIRQVHDLEREFLIKLGLVNDKDSKD
SMTEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNDDDEGEEEEEENTDYLTD
SNKENETDEENTEVMIKGGGLKHVPCVEDEDFIQALDKMMLENLQQRSGESVKVHQLDVA
IPLHLKSQLRKGPPLGGGEGETESADTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQ
QQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNA
DLIFKTGGR
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgtaaaaagccagcaagtatggaagaaaaagaaactttactaaacaac
aaggaaaaagactgcagtgaaaggcggccagtgagtagcagggagaaaccaaaagacgag
atcaagcttactgccaagaaggaggttattaaggtccctgaagataaaaagaagaaactg
gaagaagataagagaaaaaaagaagacaaggaacggaagaaaaaagaagaagaaaaggtg
aaggcggaggaagaattaaagaaaaaagaggaagaagaaaaaaagaaacatgaagaggaa
gagaaaaagaagcaagaagagcaggcaaaacgtcagcaagaagaagaagctgcccagttg
aaagagaaagaggaatcccttcagcttcatcaggaagcctgggaacgacatcagttaagg
aaggaacttcgtagcaaaaaccaaaatgctccagacaaccgaccagaggaaaatttcttt
agccgactagactcaagtttgaagaaaaatactgcttttgtcaagaaactaaaaactatt
accgagcaacagagagactccttgtcccatgattttaatggcctgaatttaagcaaatac
attgcggaagctgtagcttctattgtggaagcaaagctaaaaatatctgatgtgaactgt
gctgtgcacttgtgctctctctttcaccagcgttatgccgactttgctccatcacttctt
caggtttggaaaaaacattttgaagcgaggaaagaagagaaaacccctaacattaccaag
ttaagaactgatttgcgtttcattgcagagttgacaatagttgggattttcactgacaag
gaaggtctttccttaatctatgaacagctaaaaaatattattaatgctgaccgggaatcc
catactcatgtttctgtggtgattagtttttgtcgacactgtggagatgatattgctggg
cttgtgccacggaaagtgaagagtgctgcagagaagtttaatttgagttttcctcctagt
gagataattagtccagagaaacaacaacctttccagaatcttttaaaagaatactttaca
tctttgaccaaacacctgaaaagggaccacagggagcttcagaatactgagagacaaaac
aggcgtattctccattctaaaggggagctaagtgaagatagacataaacagtatgaggaa
tttgctatgtcctatcagaagctgctggcaaattctcaatccctagcagacctcttggat
gaaaatatgccagatcttcctcaagacaaaccaacaccagaagagcatgggcctggaatt
gatatctttacacctggtaagcctggagaatatgacttggaaggcggtatatgggaagac
gaagatgctcggaatttttatgagaacctcattgatctgaaagcttttgttccagccatc
ttgtttaaagataatgagaaaagttgtcagaataaagattccaacaaagatgattccaaa
gaggcaaaagaacctaaggataataaggaggtatcaaatcctgatgatttggaactggag
ttggagaatctagaaattaatgatgatgccttggaattagaaggtggagatgaagctgag
gatctcacaaagaaactccttgatgagcaagaacaagaggatgaagaagccagcactgga
tctcatctcaagctcatagtagatgctttcctccagcagttgcccaactgtgtcaaccga
gatctgatagacaaggcagcaatggatttttgcatgaacatgaatacaaaagcaaatagg
aagaagttggtacgggcgctctttatagttcccagacaaaggttggatttgctaccattt
tatgcaagattggttgctacattgcatccctgcatgtctgatgtagcagaggatctttgt
tccatgctgaggggggatttcagatttcatgtacgaaaaaaggaccagatcaatattgaa
acaaagaacaaaactgttcgctttattggagaattaactaaatttaagatgttcactaaa
aatgatacactacattgtttaaagatgcttctgtcagacttttcccatcaccatattgaa
atggcatgtactctgctggaaacatgtggaagatttcttttcagatcgccagaatcacac
ctgaggaccagcgtacttttggagcaaatgatgagaaagaaacaagcaatgcaccttgat
gcaaggtatgttacaatggtggagaatgcatactactactgcaacccacctccagctgaa
aaaacagtgaaaaagaaacgtcctcctctccaagaatatgtccggaaacttttgtacaaa
gatctctccaaggttaccactgagaaggttttgagacagatgcgaaagttgccttggcag
gaccaagaagtgaaagactatgttatttgttgtatgataaacatctggaatgtgaaatat
aatagtattcattgtgtagccaacctcttagcgggactggtgctctaccaagaagatgtt
ggaatccatgttgtggatggagttttagaagatattcgattaggaatggaggttaatcaa
cctaaatttaatcagagacgtatcagcagtgccaagttcttaggggaactttataattat
cgaatggtggaatcagctgttatttttagaactctttattcttttacctcctttggtgtt
aactcagatggctctccaagttcactagaccctcctgagcaccttttcagaattagacta
gtgtgcactattttggatacttgtggccagtactttgacagaggttccagtaaacgaaaa
cttgattgcttccttgtatactttcagcgttatgtttggtggaagaaaagtttggaggtt
tggacaaaagaccatccatttcctattgacatagattacatgatcagtgatacattagaa
ctgctaagaccaaagatcaaactttgtaattctctggaagaatccatcaggcaggtacac
gacttggaacgagaattcttaataaaactaggcctagttaatgacaaagattccaaagat
tctatgacagaaggagaaaatcttgaagaggatgaagaagaagaagaaggaggagctgaa
actgaagaacaatctggaaatgaaagtgaagtaaatgaaccagaagaagaggagggttct
gataatgatgatgatgaaggcgaggaggaagaggaagagaatactgattaccttacagat
tccaataaagagaacgaaactgatgaagaaaatactgaggtaatgattaagggaggtgga
cttaagcatgtaccttgtgtggaagatgaggacttcattcaagctctggataaaatgatg
ctggaaaatcttcagcaacgaagtggtgaatctgtcaaagtgcaccaacttgatgttgct
attcccttgcatctcaaaagccagctgaggaaagggcccccacttggtggtggggaggga
gaaacagagtctgcagacacgatgccgtttgtcatgttaactagaaaaggcaataaacaa
cagtttaagatccttaatgtacccatgtcttcccaacttgctgcaaatcactggaaccag
caacaggcagaacaagaagagaggatgagaatgaaaaaactcacactagatatcaatgaa
cggcaagagcaagaagattatcaagaaatgctgcagtctcttgcccagcgcccagctcca
gcaaacaccaatcgggagcggcgccctcgttaccaacatccaaagggagcacctaatgcg
gatctaatctttaagactggtgggaggtag
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integrated database retrieval system
