Canis lupus familiaris (dog): 487318
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Entry
487318 CDS
T01007
Symbol
COL16A1
Name
(RefSeq) collagen alpha-1(XVI) chain isoform X1
KO
K24339
collagen type XVI alpha
Organism
cfa
Canis lupus familiaris (dog)
Pathway
cfa04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
487318 (COL16A1)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
487318
NCBI-ProteinID:
XP_013965418
Ensembl:
ENSCAFG00000010930
VGNC:
39461
UniProt:
A0A8C0P1Z5
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Position
2:65989263..66038324
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AA seq
1625 aa
AA seq
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MWVSWLPGLWLLSLWAACSQAADTGEQCPLSQEEGLKLEHRSHLSTNVTGFNLIRRLNLM
KTSAIKKIRNPKGPLILRLGAAPLTQPMRRVFPRGLPSEFALVLTLLLKKHTHQHTWYLF
QVTDGDGYPQISLEVNSQERSLELRARGQDGDFVSCIFPVPQLFDLRWHKLVLSVAERVA
SVHVDCTSASSRPLGPRRPMRPGGHVFLGLDAEQGKPVSFDLQQAHIYCDPELVLEEGCC
EILPGGCPPETSKARRDTQSNELIEINPQTEGKVYTRCFCLEEPQNSKVDAQLTGSISQK
EERGTKARQEPAANECPPCVHGARESNVTVGPSGPKGGKGERGLPGPSGPKGEKGARGSD
CVRVSPEAPLQCAEGPKGEKGESGALGPSGLPGSAGQKGQKGEKGDGGIKGSPGKPGRDG
RPGEICVMGPKGQKGDPGFVGPEGLAGKPGPPGHPGPPGIGLPGTPGDPGGPPGPKGDKG
SSGVPGKEGPGGKPGKPGVPGLKGEKGDPCEVCPTLPEGFQNFMGLPGKPGPKGEPGDPA
PAKEGLGAVGWKGDRGDPGIQGPKGEKGDSCSSCSLAVGAQHLGPSTGAKGDVGSPGFGL
PGLPGKTGAPGPAGLKGEKGNFGEAGPAGRQGPPGPAGPTGTKGEKGEPCEPCPALSKPQ
DEDGYVVALPGPPGDKGEPGPPGFGLPGKQGRAGERGLKGQKGDAGNPGDPGVPGTMGQP
GLSGEPGVRGPVGPKGEKGDGCSACPSLQGAVTNAAGLPGKPGPKGEPGPEGVGRPGKPG
QPGLPGVQGPPGLKGIQGEPGSPGKGAQGPQGEPGVQGLPGIQGFPGPRGPPGPTGEKGA
KGSPGLKGAAGPMGPPGASVSGPPGPDGQQGQTGLPGARGMPGEKGPQGEKGEPGECSCP
SRGDPIFSGMPGAPGLWMGSSWQPGPQGPPGVPGPPGPPGMPGLQGLPGNTGLPGQPGLT
AELGSLPIEQHLLKSICGDCVQGQTAHPVGLLEKGEKGDQGIPGVPGLDSCARCFAERER
PRAEEARGDNGEGDPGCAGSPGLPGPPGLPGQRGEEGPPGMRGSPGPPGPIGPPGFPGAV
GSPGLPGLQGERGLRGPTGEKGEPGPPGQPGYPGAMGPPGLPGIKGERGYIGPPGEKGES
GPPGSEGLPGPAGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKAGAPGPP
GPQAEKGSEGIRGPPGMPGPPGPPGSPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLM
GPPGFKGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPGAMGPQGRPGPPGHIGPPGPP
GQPGPAGISAMGLKGDRGATGERGLLGLPGQPGPPGHPGPPGEPGADGAAGKEGPPGKQG
LYGPPGPKGDPGPSGQKGQAGEKGRAGMPGGPGKSGSMGPVGPPGPAGERGHPGSPGPAG
SPGLPGVPGSMGDMVNYDEIKRFIRQEIIKMFDERMAYYTSRMQFPMEMAAAPGRPGPPG
KDGAPGRPGAPGSPGLPGQIGREGRQGVPGMRGLPGTKGEKGDIGIGIAGENGLPGPPGP
QGPPGYGKMGATGPMGQQGIPGIPGPPGPMGQPGKAGHCNPSDCFGAMPMEQQYPPMKNM
KGPFG
NT seq
4878 nt
NT seq
+upstream
nt +downstream
nt
atgtgggtatcttggcttcccggcttgtggctgctcagtctctgggctgcgtgcagccag
gcggcagatacaggtgagcagtgcccactttcacaagaggaaggactcaagttggaacat
agaagccatttatcgaccaacgtaactggctttaatctcatccgccgactcaacctcatg
aaaacatctgccatcaagaagatccgcaaccccaaggggcccctcatcctgcgactgggg
gcagccccgctcacccagcccatgcggcgagtcttccctcggggcctccccagtgagttt
gccctggtgctgacgctattgctgaagaaacacacccaccagcacacgtggtatttattt
caagtgaccgatggagatgggtacccacagatttccctggaagtcaacagccaagagcgg
agcctggagctccgggcccggggccaagacggcgactttgtgtcctgcatcttcccagtg
ccccagctctttgacctgcgctggcacaagctggtgctgagcgtggctgaacgtgtggcc
tctgtgcacgtggactgcacctcagcctcctcccggcctctggggccccggcgacccatg
cggccagggggccacgtctttctgggcctggatgcggagcaggggaaacccgtctcgttt
gaccttcagcaggcacacatctactgtgacccagagcttgtgctggaggagggatgctgt
gagattttgccaggagggtgtcccccagaaacgtccaaggcccgccgggacacccagagc
aatgagctcatcgagatcaatccacaaactgaaggcaaggtctacacccgctgcttttgc
ttggaggagcctcaaaacagcaaggtggatgcccagctgacaggaagtatcagccagaaa
gaagaaagaggaacaaaggcccgtcaggagccagcagccaatgagtgtccaccctgtgtc
catggtgcccgggaaagcaatgtgacagtcggtccctctggacccaagggagggaaaggt
gagcgaggcctgcctggcccatcaggccccaaaggagagaagggagcccggggcagtgac
tgcgtccgagtctccccggaggccccacttcagtgtgcagaaggccccaagggagagaag
ggggagtcaggagccttgggaccctcaggacttccaggctctgcaggccagaagggccag
aaaggcgagaagggagacggaggcatcaagggctctccaggaaagccaggccgcgatggc
cggccaggggagatctgcgtcatggggcccaaagggcagaagggagaccccggttttgtt
gggcctgaggggctggctggaaagcctggaccccctggccaccctgggccccctgggata
ggacttcctgggaccccgggggacccaggtggcccaccaggccctaaaggagacaagggc
agctcgggggtgccaggaaaggaaggtcctggcgggaaacctgggaagccaggggtgccg
gggctgaagggagagaagggtgacccctgtgaagtgtgcccgacactgcctgagggcttc
cagaacttcatggggctccctggaaagccagggcccaagggggagccaggtgatcctgca
ccagccaaggagggcctgggagctgttggatggaaaggtgatcggggagatcctggcatc
caaggccccaagggagagaagggggactcctgctcatcctgcagcttagccgtaggagcc
cagcatcttgggccctctacaggggccaaaggagatgtgggttcccctggcttcggtttg
cctggccttccggggaaaactggggctccagggccagcagggctgaaaggagagaagggt
aattttggggaggcagggccagctggccgccaggggcctccagggccagcgggacccaca
ggcaccaaaggggagaagggggagccttgtgagccgtgcccagccctgtccaagcctcag
gacgaggatggctatgtggtggccttgcctggtcctcctggagacaaaggagagcctggg
cctccaggcttcggcttgccaggaaaacaaggcagggccggagagcgtggactgaagggg
cagaagggtgatgctgggaatcctggagatcctggagtgccaggcaccatggggcagccg
ggcctgtcgggagagcctggcgttcggggccccgtaggccctaaaggagaaaagggtgac
gggtgcagcgcctgccccagcctgcagggagcagtgacgaatgcggcaggactgcctggg
aagcccggccccaaaggagaaccaggcccagaaggtgtgggccggcctggtaaaccgggc
cagcctggtctacctggagttcaagggcccccaggactgaagggcatccagggagagcct
gggtctccaggaaagggagcccaagggccccagggggaacctggagtccagggtttgcct
ggcattcagggatttccaggacctcgagggcctcctggtcccactggagagaagggcgcc
aagggatctccggggctgaaaggagctgctgggcctatggggccccctggtgccagtgtc
tctgggcctccgggccctgatggacagcaaggacaaactggacttccaggagcaaggggg
atgccaggtgaaaagggacctcagggagagaagggcgagccaggggagtgttcctgcccc
tctcggggggatcccatcttctctggcatgccgggtgctccgggactttggatgggcagc
tcctggcagccgggcccgcagggtcccccaggggttcccggaccacctggccctcctgga
atgcctgggctacagggattgcctggaaacaccggtctgcctggacagcctgggctcacc
gctgaactggggtccttaccaatcgaacagcacctccttaagagcatctgcggggactgt
gtccaggggcagacagcccacccagtggggctcctggaaaaaggagagaagggagaccag
ggtatccccggcgtgccaggcctggacagctgtgcccggtgcttcgcggagcgggagcgc
ccaagagctgaggaggcccggggagacaacggtgagggggatccaggctgtgctggaagc
cccggcctgcccggtcctccgggactgcccggccagagaggagaagagggtccgcctggc
atgaggggctccccgggtcctccaggccctattggccctccaggttttcctggtgctgtt
ggctcccccggattgcctggtcttcaaggggagcgaggcctcaggggcccgacaggagag
aagggagaaccgggtcctccagggcaacctggctacccaggcgccatgggccccccagga
ctgcctggcatcaagggggaacggggctacatcgggcccccgggagagaagggagaatcg
ggcccaccaggatctgaaggtctcccaggtcccgcaggcccagcgggtccccgaggagag
cgaggaccccaagggaactcgggagagaagggtgaccagggatttcaaggccagccaggc
tttcccggcccaccgggtccccctggattcccaggcaaggctggagcgcctggcccaccc
ggcccccaagcagagaagggcagtgaagggattcgaggcccaccaggcatgcctggtccc
cctgggccaccaggatctcctgggattcagggccctgctggcctggatggtctggatggg
aaggacggcaagcctggcttgaggggggaccctggtcccgctggcccccccggactcatg
ggacccccgggcttcaagggaaaaacaggacaccctggcctcccaggaccaaagggtgac
tgtgggaaaccgggtcccccaggcagcagtggtcggcccggagcagagggtgagcctggt
gccatgggacctcagggaagacccggccccccaggccacattgggcctccagggcctcca
ggccagccaggtcctgccgggatctctgcaatgggcctaaaaggagatcggggagccact
ggagaaaggggccttctagggcttccaggccagcctggcccccctggacaccctggcccc
ccgggtgaacctggggcagatggtgcagctggcaaagagggaccccctggaaaacaggga
ctctatggaccccctggtccaaagggtgatccaggaccttcaggacagaagggccaggca
ggagagaagggaagagctggcatgcctggtgggcctggcaagagtggctccatggggcct
gttgggccaccaggtcctgcaggagagaggggccaccctggatctccggggcctgcaggg
agcccaggattgcccggggtgcctggctccatgggagacatggtgaattatgatgaaatc
aagaggttcatcagacaagagatcattaaaatgtttgatgagaggatggcttactacacc
tccaggatgcagttccccatggagatggccgcagctccaggacgaccagggcccccgggg
aaggacggtgccccaggccggccaggcgctccgggatcacccggacttcctggccagatt
ggcagggaaggacggcagggcgtgccaggcatgagaggattgcccggtaccaaaggtgaa
aaaggggacattggtatcggcattgcaggagaaaatggtctccccggcccgccaggtcct
caaggccctccagggtatggcaagatgggtgccactggaccaatgggccagcaaggcatt
cctggcatccctgggcccccaggtcccatgggccagccgggcaaggctggccactgtaac
ccctctgactgctttggagccatgccaatggagcagcagtacccacccatgaagaacatg
aaggggcctttcggctga
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integrated database retrieval system
