Canis lupus familiaris (dog): 487352
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Entry
487352 CDS
T01007
Symbol
ARID1A
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
cfa
Canis lupus familiaris (dog)
Pathway
cfa03082
ATP-dependent chromatin remodeling
cfa04714
Thermogenesis
cfa05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
487352 (ARID1A)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
487352 (ARID1A)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
487352 (ARID1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cfa03000
]
487352 (ARID1A)
03021 Transcription machinery [BR:
cfa03021
]
487352 (ARID1A)
03036 Chromosome and associated proteins [BR:
cfa03036
]
487352 (ARID1A)
Transcription factors [BR:
cfa03000
]
Eukaryotic type
Helix-turn-helix
ARID
487352 (ARID1A)
Transcription machinery [BR:
cfa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
487352 (ARID1A)
Chromosome and associated proteins [BR:
cfa03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
487352 (ARID1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
487352
NCBI-ProteinID:
XP_005617799
Ensembl:
ENSCAFG00000012314
VGNC:
38093
LinkDB
All DBs
Position
2:complement(69909026..69978542)
Genome browser
AA seq
2285 aa
AA seq
DB search
MAAQVAPAAASSLGNPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQESEGP
AVGPPQPLGKELQDGAESNGGGGGGGAGAGGGPGAEPDLKNSNGNAGPRPALNNNLTEPP
GGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGL
AALQSGGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPPQAYALSSPRGGTPG
SGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLT
SPSSARGYQGYPGGDYGGGPQDGGAGKGPADMASQCWGAAAAAAAAAAAASGGAQQRSHH
APMSPGSSGGGAQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPSSGPQQGHGYPG
QPYGSQTPQRYPMAMQGRAQSAMGGLSYAQQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQ
QQQPPYSQQPPSQNPHAQPSYQQQPQSQPPQLQASQPPYSQQPSQPPHQQSPTPYPSQQP
TTQQHPQSQPPYSQPQAQSPYQQQQPQQPASSTLSQQAAYPQPQSQQSQQTAYSQQRFPP
PQELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALSP
GVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAV
PAGNQMPPRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSALSPRQPSG
GQMHTGMGSYQQNSMGSYGPQGSQYGPQGGYPRQPNYNALPNANYPSAGMAGSMNPMGAG
GQMHGQPGIPPYGTLPPGRMSHASMGNRPYGPNMANMPPQVGSGMCPPPGGMNRKTQETA
VAMHVAANSIQNRPPGYPNMNQGGMMGTGPPYGQGINSMAGMINPQGPPYPMGGTMANNS
AGMAASPEMMGLGDVKLTPATKMNNKADGTPKTESKSKKSSSSTTTNEKITKLYELGGEP
ERKMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELAT
NLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAASDSKKSQPKIQPPSPAGS
GSMQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMSRSNSVGIQDAFPDGSDPT
FQKRNSMTPNPGYQPSMNTSDMMGRMSYEPNKDPYGSMRKAPGSDPFMSSGQGPNGGMGD
PYSRAAGPGLGNVAMGPRQHYPYGGPYDRVRTEPGIGPEGNMGTGAPQPNLMPSNPDSGM
YSPSRYPPQQQQQQQRHDSYGNQFSTQGTPSGSPFPSQQTTMYQQQQQNYKRPMDGTYGP
PAKRHEGEMYSVPYSTGQGQPQQQQLPPAQPQPASQQQAAQPSPQQDVYNQYGNAYPATA
AAATERRPAGGPQNQFPFQFGRDRVSAPPGSNAQQNMPPQMMGGPIQASAEVAQQGTMWQ
GRNDMTYNYTNRQSTGSAPQGPAYHGVNRTDEMLHTDQRANHEGPWPSHGTRQPPYGPSA
PVPPMTRPPPSNYQPPPSMQNHIPQVSSPAPLPRPMENRTSPSKSPFLHSGMKMQKAGPP
VPASHIAPAPVQPPMIRRDITFPPGSVEATQPVLKQRRRLTMKDIGTPEAWRVMMSLKSG
LLAESTWALDTINILLYDDNSIMTFNLSQLPGLLELLVEYFRRCLIEIFGILKEYEVGDP
GQRTLLDPGRFSKACSPAPMEGEEEEDLLGPKLEEEEEEEVVENDEEMAFSGKDKAATES
SEEKLISKFDKLPVKIVQKNDPFVVDCSDKLGRVQEFDSGLLHWRIGGGDTTEHIQTHFE
SKTELLPNRPHVPCPPVTRKHVTAPEGTPGTTEQEGPPPDGPPEKRITATMDDMLSTRSS
TLTEEGAKSTEATKESSKFPFGISPAQSHRNIKILEDEPHSKDETPLCTLLDWQDSLAKR
CVCVSNTIRSLSFVPGNDFEMSKHPGLLLILGKLILLHHKHPERKQAPLTYEKEEEQDQG
VSCNKVEWWWDCLEMLRENTLVTLANISGQLDLSPYPESICLPVLDGLLHWAVCPSAEAQ
DPFSTLGPNAVLSPQRLVLETLSKLSIQDNNVDLILATPPFSRLEKLYSTMVRFLSDRKN
PVCREMAVVLLANLAQGDSLAARAIAVQKGSIGNLLGFLEDSLAATQFQQSQASLLHMQN
PPFEPTSVDMMRRAARALLALAKVDENHSEFTLYESRLLDISVSPLMNSLVSQVICDVLF
LIGQS
NT seq
6858 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcaggtcgcccccgccgccgccagcagcctgggcaacccgccgccgccgccc
tcggagctgaagaaagcggagcagcagcagcgggaggaggcggggggcgaggcggcggcg
gcggcagcggccgagcgcggggaaatgaaggcagccgccgggcaggagagcgagggcccc
gccgtggggccgccgcagccactgggaaaggagctgcaggacggggccgagagcaatggg
ggtggcggcggcggtggagccggcgccggcggcgggcccggcgcggagccggacctgaag
aactcgaacgggaacgcgggccctaggcccgccctgaacaataacctcacggagccgccc
ggcggcggcggcggcggcagcagcgatggggtgggggcgcctcctcactcagccgcggcc
gccttgccgcccccagcctacggcttcgggcaaccctacggccggagcccgtctgccgtc
gccgccgcggcggccgccgtcttccaccaacaacatggcggacaacaaagccctggcctg
gcagcgctgcagagcggcggcggcggcgggggcctggagccctacgcggggccccagcag
aactcgcacgaccacggcttccccaaccaccagtacaactcctactaccccaaccgcagc
gcctaccccccgcccccccaggcctacgcgctgagctccccgagaggtggcactccgggc
tccggcgcggcggcggccgccggctccaagccgcctccctcttccagcgcctccgcctcc
tcgtcgtcttcgtccttcgctcagcagcgcttcggggccatggggggaggcggcccctca
gcggccggcgggggaaccccccagcccaccgccacccccaccctcaaccaactgctcacg
tcgcccagctcggcccggggctaccagggctaccccgggggcgactacggcggcgggccc
caggacgggggcgccggcaagggcccggcggacatggcctcgcagtgctggggggctgcg
gcggcggcggcggcggcggcagcagccgcctcgggaggggcccaacaaaggagccaccac
gcgcccatgagccccgggagcagcggcggcggggcgcagccgctcgcccggaccccgcag
ccatccagtccaatggatcagatgggcaagatgagacctcagccatatggcgggactaac
ccatactcgcaacaacagggaccttcatcaggaccgcagcaaggacatgggtacccaggg
cagccatatgggtcccagaccccgcagcggtacccgatggccatgcaaggccgggcgcag
agtgccatgggtggcctctcttatgcacagcagattcctccttatggacaacaaggcccc
agtgggtatggtcaacagggccaaactccatattacaaccagcaaagtcctcacccccag
cagcagcagccgccctactcccagcagccaccgtcccagaaccctcacgcccagccttcc
tatcagcagcagccacagtctcagccaccacagctccaggcttctcagcctccctattcc
cagcagccatcccagcctccgcatcagcagtccccaactccatacccctcccagcagccc
accacccagcagcacccccagagccagcccccctactcacagccacaggcacagtctccc
taccagcagcagcaacctcagcagccagcctcctcgacgctctcccagcaggctgcatac
cctcagccccagtctcagcagtcacagcaaactgcctattcccagcagcgcttccctccg
ccgcaggagttatctcaagattcatttgggtctcaggcatcctcagccccctcaatgacc
tccagtaagggaggacaagaagatatgaacctgagtcttcagtcaagaccctcaagcttg
cctgatctatctggttcaatagacgatctccccatggggacagaaggagctctgagccct
ggagtgagcacatcagggatttccagcagccaaggagagcagagtaatccagctcagtct
cctttctctcctcatacttcccctcacctgcctggcatccgaggcccctccccatcccct
gttggctctcctgccagtgttgctcagtctcgctcaggaccactctcgcctgctgcagtg
ccagcaggcaaccagatgccacctcggccacccagtggccagtcggacagcatcatgcat
ccttccatgaatcaatcgagcattgcccaagatcgaggttacatgcagaggaacccccag
atgccccagtacagttccccccagcccggctcggccttatctccgcgtcagccttcgggt
ggacagatgcacacaggcatgggctcctaccagcagaactccatggggagctacggtccc
caggggagtcagtacggcccacagggaggctaccccaggcagccaaactataatgccttg
cccaatgctaactaccctagtgcaggcatggccggaagcatgaaccctatgggtgctgga
ggtcagatgcatgggcagcctggcatcccaccttatggcacactccctccagggagaatg
agtcatgcctccatgggcaaccgaccttatggccctaacatggccaatatgccacctcag
gttgggtcagggatgtgtcccccaccagggggcatgaaccggaaaactcaagaaactgct
gtcgccatgcatgttgctgccaactctatccaaaacaggccaccaggctaccccaatatg
aatcaggggggcatgatgggaactggacctccctacggacaagggattaatagtatggct
ggcatgatcaaccctcagggacccccgtatcctatgggtgggactatggccaacaattca
gcagggatggcagccagcccagagatgatgggccttggggatgtcaagttaactccagcc
accaaaatgaacaacaaggcagatgggacacccaagacagaatccaaatccaagaaatcc
agttcttctactacaaccaatgagaagatcaccaagttgtatgagctgggtggtgagcct
gagaggaagatgtgggtggaccgttatctggccttcacggaggagaaggccatgggcatg
acaaatctgcctgctgtgggtaggaaacctctggacctctatcgcctctatgtgtctgtg
aaggagattggtggattgactcaggtcaacaagaacaaaaaatggcgggaacttgcgacc
aacctcaatgtgggcacctcgagcagtgctgccagctccttgaaaaagcagtacatccag
tgtctctatgcctttgagtgcaagattgaacggggagaagaccctcccccagacatcttt
gcagcttctgattccaagaagtcccagcccaagatccagcctccctctcctgcgggatct
gggtctatgcaggggccacagacacctcagtcaaccagcagttccatggcagaaggagga
gacctgaagccaccaactccagcatccacaccacacagtcagatcccccccttgccaggc
atgagcaggagcaattcggttgggatccaggatgcctttcctgatggaagtgaccccaca
ttccagaagcggaattccatgactccaaaccctgggtaccagcccagtatgaatacctct
gacatgatggggcgcatgtcctacgagccaaataaggatccttatggcagcatgaggaaa
gctccagggagcgatcccttcatgtcctcagggcagggccccaatggcggaatgggagac
ccctacagccgtgctgctggccctgggctgggaaatgtggcaatgggaccgcgacagcac
tatccctatggaggtccttatgacagagtgaggacggagcctggaataggacccgaggga
aacatgggcactggagctccacagccgaatctcatgccttccaacccagactcggggatg
tattctcccagccgctaccccccgcaacagcagcagcagcaacaacgacatgattcctat
ggcaatcagttctccactcaaggcaccccttccggcagccccttccccagccagcagacc
acaatgtatcagcagcagcagcagaattacaaacggccaatggatggcacatacggccct
cccgccaagcggcacgaaggggagatgtacagcgtgccatacagcacagggcaggggcag
ccgcaacagcagcagttgcccccagcccagccccagcctgccagccagcagcaagctgcc
cagccttcccctcagcaagatgtatacaaccagtatggcaacgcttatcctgccactgcc
gctgctgctactgagcgccgaccagcaggcggcccccagaaccagtttccattccagttt
ggccgagaccgtgtctctgcaccccctggctccaatgcccagcagaacatgccaccgcaa
atgatgggcggccccatacaagcatcggctgaggttgctcagcaaggcaccatgtggcag
gggcgtaatgacatgacctacaattacaccaacaggcagagcactggctctgccccccag
ggccctgcctatcatggtgtgaaccgaacagatgaaatgctgcatacggatcagagggcc
aaccatgaaggcccatggccttcccatggtacacgtcagcccccatatggtccctctgcc
cccgtgccccccatgacaaggccccctccatccaactaccagcccccgccaagcatgcag
aatcacattcctcaggtatccagccccgctcccctgccccggccaatggagaaccgcacc
tctcctagcaagtctccattcctacactctgggatgaagatgcaaaaggcaggcccccca
gtacctgcctcgcacatagcacctgcccccgtgcagccacccatgattcggcgggacatc
accttcccacctggctctgtggaagcaacacagcctgtgttgaagcaaaggaggcggctc
acaatgaaagacatcggaaccccggaggcatggcgggtaatgatgtccctcaagtctggg
ctgctggcagagagcacatgggcattagacaccattaacatcctgctgtatgatgacaac
agcatcatgaccttcaacctcagtcagctcccaggtttgttagagctccttgtggaatat
ttccgacgttgcctgatcgagatctttggcattttaaaggagtatgaggtgggtgaccca
ggacagagaacactactggaccctgggagattcagcaaggcgtgtagtccagcccccatg
gagggggaggaggaagaagaccttttaggtcctaaactagaggaggaagaagaggaagaa
gtagtggaaaatgacgaggagatggccttttcgggcaaggacaaggcagccacagagagt
agtgaggagaaacttattagtaagttcgacaagcttccagtaaagatcgtgcagaagaat
gacccgtttgtggtggactgctcagataagcttgggcgcgtgcaggagtttgacagtggc
ctgctgcactggcggattggtgggggggacaccactgagcatatccagacccactttgag
agcaagacagagctgctgccgaaccggcctcatgtgccctgccctccagtcacccggaaa
catgtcacagcaccagagggtacgccagggacgacagaacaggagggccccccacctgat
ggccctccagagaaacggatcacagccacaatggatgacatgttgtccactcggtctagc
acgttgaccgaagagggagctaagagtacagaggccaccaaggagagcagcaagtttcca
ttcggcatcagcccggcacagagccaccggaacatcaagatcctagaggacgaaccccac
agtaaagatgagaccccactgtgtacccttctggactggcaggattccctcgccaaacgc
tgcgtctgtgtctccaataccatccgaagtctatcgtttgtgccaggcaacgactttgag
atgtccaaacacccgggtctgctgctgatcctgggcaagctgatcctcctgcatcacaag
cacccagagcggaagcaggcaccactgacttatgagaaggaggaggagcaggaccaaggg
gtgagctgcaacaaagtggagtggtggtgggactgcttggagatgctccgggaaaacacc
ttggtcacgctcgccaacatctcggggcagttggacctctctccgtaccctgagagcatt
tgcctgcctgtcctggacggactcctacactgggcagtctgcccttccgctgaagcccag
gaccccttctccaccctgggccccaatgccgtcctctccccccagagactggtcttggaa
accctcagcaaactcagcatccaggacaacaatgtggacctgatcctggccacgcccccc
ttcagccgcttggagaagttgtatagcaccatggtgcgcttcctcagtgaccgaaagaac
ccggtgtgccgggagatggctgtggtactgctggccaacctggcacagggcgacagcctg
gcagctcgtgccatcgcagtgcagaagggcagcatcggcaacctcctgggcttcctggag
gacagccttgctgccacacagttccagcagagccaggccagcctgctccacatgcagaac
ccgcccttcgagccaacgagtgtggacatgatgcggcgggctgcccgcgcactgctggcc
ttggccaaggtggacgagaaccactcggagttcacgctgtacgagtcacggctgttggac
atctcggtatcaccgttgatgaactcgttggtttcacaagtcatttgtgatgtactgttt
ttgattggccagtcatga
DBGET
integrated database retrieval system
