Canis lupus familiaris (dog): 487516
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Entry
487516 CDS
T01007
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X3
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
cfa
Canis lupus familiaris (dog)
Pathway
cfa04140
Autophagy - animal
cfa04148
Efferocytosis
cfa05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
487516 (VPS39)
04148 Efferocytosis
487516 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
487516 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cfa04131
]
487516 (VPS39)
Membrane trafficking [BR:
cfa04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
487516 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_2
Vps39_1
CNH
Clathrin
EcoR124_C
Motif
Other DBs
NCBI-GeneID:
487516
NCBI-ProteinID:
XP_013965043
Ensembl:
ENSCAFG00000010031
VGNC:
48290
UniProt:
A0A8C0P521
A0A8I3NYS1
LinkDB
All DBs
Position
30:complement(9224925..9271967)
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AA seq
886 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDAVLTGVASPESGSCN
RFEVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLF
TCDLQHTETGEEVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVG
FKRDYYLIRVDGKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCA
LNWTDIPVAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSNIIYVASN
HFVWRLIPVPMATQIQQLLQDKQFELALQLAEMKEDSDSEKQQQIHHIKNLYAFNLFCQK
RFDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYL
TQKRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLL
RLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTV
QYLQHLGTENLHLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLCFLVENFKGLA
IPYLEHVIHVWEETGSRFHNCLIQLYCEKVQGLMKEYLLSFPAGKTPVPAGEEEGELGEY
RRKLLIFLEISGYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTKMAE
EYCHKHYDQNRDGNKDVYLSLLRMYLSPPSVHCLGPIKLELLEPQANLQAALQVLELHHS
KLDTTKAINLLPANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQ
QVKCIITEEKVCMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgagccagtgccgatcctagaaaagctgcctctgcagatcgactgt
ctggctgcctgggaagaatggcttcttgttggcaccaaacaaggacatcttcttctctat
aggatccgaaaggatgctgtgttaacaggtgtagcatctcctgaaagcggcagttgcaac
aggtttgaagtgacactagagaaatccaataaaaacttctccaaaaagattcagcagatc
catgtggtttcccagtttaagattctggtcagcttgttagaaaataacatttatgttcat
gacctattgacctttcaacaaatcaccacagtttcaaaggcaaagggagcatcactattc
acatgtgacctccaacacacagagactggtgaggaggtattgcggatgtgtgtggccgtg
aaaaagaagctgcagctctatttctggaaggatagggaatttcatgaattgcagggggac
tttagtgtaccagatgtgcccaagtctatggcatggtgtgaaaactccatctgtgtgggt
ttcaagagagactactacctaataagggtggatggaaaagggtccatcaaagagctcttt
ccaacaggaaaacaactggagccgttagttgcacctctggcagatggaaaagtggctgtg
ggtcaggatgatctcaccgtggtgctcaatgaggaggggatctgcacacagaaatgtgcc
ttgaactggacagacatcccagtggccatggagcaccagcctccctacatcattgcagtt
ttgcctcgatatgtggagatccgaacatttgagccaaggcttctggtccagagcattgaa
ttgcaaaggccccgcttcattacctctggaggatcaaacataatctatgtggctagcaat
cattttgtttggagactcattcctgtccccatggcaacccaaatccaacagcttctccag
gacaagcagtttgaattggctctacagctcgcagaaatgaaagaagattcggacagcgaa
aagcagcaacagatccatcacatcaagaacttgtatgccttcaacctcttctgccagaag
cgttttgatgagtccatgcaggtctttgctaagcttggcacagatcctacccatgtgatg
ggcctatacccagacctgctgcccacagactacagaaagcaactgcagtatcctaaccca
ctgccagtgctgtcgggggctgaattggagaaggcacatttagctctgattgactacctg
acacagaaacgaagccaattggtaaagaaactgaatgactctgatcaccagtctagcacc
tcccctctcatggaaggcactccgaccatcaaatcaaagaagaagctattgcaaatcatt
gataccaccctgctcaagtgctacctccatacgaacgtggccttggtggcgcctctgctg
cgcctggagaacaatcactgccacatcgaggagagtgagcatgtgctgaagaaggcgcac
aagtacagtgaactgataatcctgtatgagaagaaggggctccatgagaaagctctgcag
gtgctggtggaccagtccaagaaagcaaactcccctctgaaaggccatgagaggacagtg
cagtatctgcaacatttgggcacagaaaacctgcatttgattttttcgtactcggtatgg
gtgctgcgagacttcccagaggatggcctgaagatatttaccgaagacctcccggaggtg
gaatctctgccacgagaccgagtgctctgcttcttagtggagaattttaagggtctagct
attccttatctggagcatgtcattcacgtttgggaggagacgggctctcgattccacaac
tgcctgatccagctgtactgtgagaaggtgcaaggtctgatgaaggagtatctcctgtcc
ttccctgcaggcaaaactccagtccctgctggagaggaagagggtgagctgggagagtac
cgacggaagctccttatattcttggaaatttctggctactatgatccaggccggctcatc
tgtgactttccttttgatggcctcttagaagagcgtgcactgctgctggggcgcatggga
aagcatgagcaagcgctcttcatctacgtgcacatcctgaaggacacaaagatggctgag
gagtactgccacaagcattacgaccaaaacagagatggcaacaaagatgtgtatctgtcc
ctgctccggatgtacctgtcgccccctagtgttcattgcctgggacccatcaaactggaa
ctgctggagccacaggccaacctccaggctgccctgcaggtcctcgagctgcaccacagc
aagctggacaccactaaggccatcaaccttctaccagcaaacactcagattaatgacata
cgtatctttctggaaaaggtcttggaagaaaatgcacaaaaaaaacggttcaatcaagtg
ctcaagaacctcctccatgcagaatttctgagggtccaggaagagcggattttacaccag
caggtgaagtgcatcatcacagaggagaaggtgtgtatggtgtgtaagaagaagattggg
aacagtgcatttgcaagataccccaatggagtggtcgtgcactacttctgttccaaagag
gtaaacccagccgacacctga
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